| line |
true |
false |
branch |
|
301
|
0 |
3 |
if $ENV{'PHYLIPDIR'} |
|
311
|
0 |
7 |
if $attr =~ /^-/ |
|
312
|
0 |
7 |
if ($attr =~ /PROGRAM/i) |
|
316
|
1 |
6 |
if ($attr =~ /IDLENGTH/i) |
|
330
|
0 |
6 |
unless $Bio::Tools::Run::Phylo::Phylip::ProtDist::OK_FIELD{$attr} |
|
331
|
6 |
0 |
if @_ |
|
348
|
1 |
0 |
if (@_) |
|
388
|
0 |
0 |
unless ($infilename) |
|
393
|
0 |
0 |
wantarray ? : |
|
415
|
0 |
0 |
unless ('File::Spec'->file_name_is_absolute($infile)) |
|
423
|
0 |
0 |
if ($self->quiet or $self->verbose < 0) { } |
|
424
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
436
|
0 |
0 |
unless -e $outfile |
|
447
|
0 |
0 |
unless $self->save_tempfiles |
|
492
|
0 |
0 |
unless (ref $input) |
|
495
|
0 |
0 |
unless (-e $input) |
|
498
|
0 |
0 |
ref $input eq 'ARRAY' ? : |
|
507
|
0 |
0 |
if ($input->isa('Bio::SimpleAlign')) |
|
522
|
0 |
0 |
if ($val) |
|
550
|
0 |
0 |
unless defined $value |
|
551
|
0 |
0 |
if ($attr =~ /MODEL/i) |
|
552
|
0 |
0 |
if ($value =~ /CAT/i) |
|
557
|
0 |
0 |
if ($attr =~ /MULTIPLE/i) |
|
560
|
0 |
0 |
if ($cat == 1) |
|
561
|
0 |
0 |
if ($attr =~ /GENCODE/i) |
|
563
|
0 |
0 |
unless $value =~ /[$allowed]/ |
|
566
|
0 |
0 |
if ($attr =~ /CATEGORY/i) |
|
568
|
0 |
0 |
unless $value =~ /[$allowed]/ |
|
571
|
0 |
0 |
if ($attr =~ /PROBCHANGE/i) |
|
572
|
0 |
0 |
if ($value =~ /\d+/ and $value >= 0 and $value < 1) { } |
|
579
|
0 |
0 |
if ($attr =~ /TRANS/i) |
|
580
|
0 |
0 |
if ($value =~ /\d+/ and $value >= 0) |
|
584
|
0 |
0 |
if ($attr =~ /FREQ/i) |
|
586
|
0 |
0 |
if (not $freq[0] =~ /\d+/) { } |
|
|
0 |
0 |
elsif ($#freq == 3) { } |
|
602
|
0 |
0 |
if (not $param_string =~ /$menu{'MULTIPLE'}/ and (defined $self->_input_nbr and $self->_input_nbr > 1)) |