Subroutine Coverage
| blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
15 |
23 |
65.2
|
| pod |
13 |
13 |
100.0
|
| line |
count |
pod |
subroutine |
|
98
|
1 |
n/a |
BEGIN |
|
99
|
1 |
n/a |
BEGIN |
|
100
|
1 |
n/a |
BEGIN |
|
101
|
1 |
n/a |
BEGIN |
|
102
|
1 |
n/a |
BEGIN |
|
103
|
1 |
n/a |
BEGIN |
|
104
|
1 |
n/a |
BEGIN |
|
105
|
1 |
n/a |
BEGIN |
|
238
|
1 |
n/a |
BEGIN |
|
359
|
6 |
Yes |
program_name |
|
373
|
3 |
Yes |
program_dir |
|
398
|
1 |
Yes |
new |
|
436
|
0 |
Yes |
prepare |
|
524
|
0 |
Yes |
run |
|
573
|
0 |
Yes |
error_string |
|
595
|
0 |
Yes |
alignment |
|
628
|
0 |
Yes |
tree |
|
657
|
0 |
Yes |
get_parameters |
|
680
|
8 |
Yes |
set_parameter |
|
713
|
1 |
Yes |
set_default_parameters |
|
745
|
0 |
Yes |
no_param_checks |
|
777
|
0 |
Yes |
outfile_name |
|
821
|
1 |
n/a |
DESTROY |