| line |
true |
false |
branch |
|
167
|
0 |
3 |
if $ENV{'WISEDIR'} |
|
178
|
1 |
2 |
if $attr =~ /^-/ |
|
190
|
0 |
1 |
unless $Bio::Tools::Run::Genewise::OK_FIELD{$attr} |
|
191
|
1 |
0 |
if @_ |
|
209
|
0 |
0 |
unless $self->executable |
|
212
|
0 |
0 |
if ($string =~ /Version:\s+\$\s*Name:\s+(\S+)\s+\$/) { } |
|
|
0 |
0 |
elsif ($string =~ /(Version *)/i) { } |
|
267
|
0 |
0 |
unless ($infile1 and $infile2) |
|
289
|
0 |
0 |
unless ($self->executable) |
|
297
|
0 |
0 |
if ($self->silent and $self->quiet and not $^O =~ /os2|dos|amigaos/) |
|
299
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
305
|
0 |
0 |
unless $status == 0 |
|
319
|
0 |
0 |
unless $start |
|
320
|
0 |
0 |
unless $end |
|
322
|
0 |
0 |
if ($start > $end) { } |
|
338
|
0 |
0 |
unless $arg1 and $seq2 |
|
343
|
0 |
0 |
if (not ref $arg1) { } |
|
344
|
0 |
0 |
unless (-e $arg1) |
|
345
|
0 |
0 |
if ($self->hmmer) { } |
|
355
|
0 |
0 |
if ($self->hmmer) { } |
|
371
|
0 |
0 |
if (not ref $seq2) { } |
|
372
|
0 |
0 |
unless (-e $seq2) |
|
408
|
0 |
0 |
unless defined $value |
|
414
|
0 |
0 |
unless defined $value |
|
436
|
0 |
0 |
if (defined $seq) |
|
456
|
0 |
0 |
if (defined $seq) |