| blib/lib/Bio/Tools/Run/Bowtie.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 17 | 27 | 62.9 |
| pod | 6 | 8 | 75.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 180 | 1 | n/a | BEGIN |
| 184 | 1 | n/a | BEGIN |
| 187 | 1 | n/a | BEGIN |
| 191 | 1 | n/a | BEGIN |
| 192 | 1 | n/a | BEGIN |
| 193 | 1 | n/a | BEGIN |
| 194 | 1 | n/a | BEGIN |
| 195 | 1 | n/a | BEGIN |
| 196 | 1 | n/a | BEGIN |
| 197 | 1 | n/a | BEGIN |
| 198 | 1 | n/a | BEGIN |
| 200 | 1 | n/a | BEGIN |
| 227 | 2 | Yes | new |
| 274 | 0 | Yes | run |
| 447 | 2 | Yes | want |
| 463 | 0 | Yes | result |
| 558 | 2 | n/a | _determine_format |
| 590 | 0 | n/a | _make_bam |
| 630 | 0 | n/a | _validate_file_input |
| 668 | 2 | n/a | _assembly_format |
| 682 | 0 | n/a | _check_sequence_input |
| 692 | 0 | n/a | _check_optional_quality_input |
| 703 | 0 | n/a | _prepare_input_sequences |
| 799 | 8 | Yes | set_parameters |
| 838 | 0 | Yes | version |
| 874 | 0 | No | available_commands |
| 876 | 0 | No | filespec |