| blib/lib/Bio/Tools/Run/BWA.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 10 | 23 | 43.4 |
| pod | 6 | 8 | 75.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 172 | 1 | n/a | BEGIN |
| 174 | 1 | n/a | BEGIN |
| 178 | 1 | n/a | BEGIN |
| 184 | 1 | n/a | BEGIN |
| 185 | 1 | n/a | BEGIN |
| 186 | 1 | n/a | BEGIN |
| 187 | 1 | n/a | BEGIN |
| 188 | 1 | n/a | BEGIN |
| 189 | 1 | n/a | BEGIN |
| 191 | 1 | n/a | BEGIN |
| 217 | 0 | Yes | new |
| 245 | 0 | Yes | run |
| 319 | 0 | Yes | run_bwa |
| 409 | 0 | Yes | stdout |
| 428 | 0 | Yes | stderr |
| 443 | 0 | n/a | _check_sequence_input |
| 453 | 0 | n/a | _check_optional_quality_input |
| 463 | 0 | n/a | _prepare_input_sequences |
| 479 | 0 | n/a | _collate_subcmd_args |
| 520 | 0 | n/a | _run |
| 586 | 0 | Yes | available_parameters |
| 604 | 0 | No | available_commands |
| 606 | 0 | No | filespec |