| line |
!l |
l&&!r |
l&&r |
condition |
|
226
|
0 |
0 |
19 |
$self->region eq 'coding' and $self->start |
|
|
0 |
0 |
19 |
$self->region eq 'coding' and $self->start and $self->start >= 1 |
|
237
|
1 |
2 |
16 |
$self->allele_ori and $self->allele_ori->seq |
|
274
|
0 |
0 |
59 |
$self->allele_ori->seq and $self->allele_mut->seq |
|
|
0 |
0 |
59 |
$self->allele_ori->seq and $self->allele_mut->seq and length $self->allele_ori->seq == 1 |
|
|
0 |
0 |
59 |
$self->allele_ori->seq and $self->allele_mut->seq and length $self->allele_ori->seq == 1 and length $self->allele_mut->seq == 1 |
|
|
0 |
0 |
59 |
$self->allele_ori->seq and $self->allele_mut->seq and length $self->allele_ori->seq == 1 and length $self->allele_mut->seq == 1 and $self->region eq 'coding' |
|
|
0 |
0 |
59 |
$self->allele_ori->seq and $self->allele_mut->seq and length $self->allele_ori->seq == 1 and length $self->allele_mut->seq == 1 and $self->region eq 'coding' and $self->start >= 1 |
|
290
|
0 |
0 |
59 |
$self->allele_mut and $self->allele_mut->seq |
|
467
|
7 |
0 |
0 |
not defined $self->start and $self->verbose |
|
469
|
7 |
0 |
0 |
not defined $self->end and $self->verbose |
|
471
|
7 |
0 |
0 |
not defined $self->cds_end and $self->verbose |
|
475
|
0 |
7 |
0 |
$self->end and $self->end < 0 |
|
|
0 |
0 |
7 |
$self->start and $self->cds_end |
|
|
0 |
7 |
0 |
$self->start and $self->cds_end and $self->start > $self->cds_end |
|
539
|
3 |
10 |
42 |
$self->allele_ori and $self->allele_ori->seq |
|
540
|
3 |
8 |
44 |
$self->allele_mut and $self->allele_mut->seq |
|
543
|
13 |
8 |
34 |
$o and $m |
|
|
21 |
6 |
28 |
$o and $m and length $o == 1 |
|
|
14 |
0 |
28 |
$o and $m and length $o == 1 and length $m == 1 |
|
545
|
0 |
24 |
0 |
$self->start > 0 and $self->start < 4 |
|
|
0 |
24 |
0 |
$self->codon_ori and $ct->is_ter_codon($self->codon_ori) |
|
|
0 |
19 |
5 |
$self->codon_mut and $ct->is_ter_codon($self->codon_mut) |
|
|
0 |
0 |
19 |
$o and $m |
|
|
0 |
19 |
0 |
$o and $m and $o eq $m || $self->AAChange->allele_ori->seq eq $self->AAChange->allele_mut->seq |
|
584
|
0 |
27 |
0 |
$self->codon_ori and $ct->is_ter_codon($self->codon_ori) |