| Bio/Tree/TreeFunctionsI.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 33 | 85 | 38.8 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 136 | 0 | 1018 | 1961 | $_->can($type) and defined $_->$type |
| 171 | 1 | 0 | 0 | not $node->ancestor and $self->get_root_node->internal_id != $node->internal_id |
| 423 | 0 | 0 | 23 | ref $node and $node->isa('Bio::Tree::NodeI') |
| 455 | 0 | 2 | 8 | $lca and $self->number_nodes > 0 |
| 579 | 8 | 52 | 44 | $node->ancestor and $node->each_Descendent == 1 |
| 766 | 0 | 0 | 0 | $node->is_Leaf && !($id =~ /^artificial/) |
| 899 | 0 | 0 | 6 | defined $nodes and defined $outgroup |
| 946 | 0 | 0 | 2 | defined $nodes and defined $outgroup |
| 1006 | 0 | 0 | 18 | defined $new_root and $new_root->isa('Bio::Tree::NodeI') |
| 1066 | 0 | 0 | 0 | defined $node and $node->isa('Bio::Tree::NodeI') |
| 1074 | 0 | 0 | 0 | defined $id and not ref $id |
| 1099 | 0 | 0 | 0 | $rootnode->id and $rootnode->id eq $id |
| 1104 | 0 | 0 | 0 | $node->id and $node->id eq $id |
| line | l | !l | condition |
|---|---|---|---|
| 209 | 341 | 258 | $self->get_root_node || '' |
| 213 | 4807 | 261 | $node->ancestor || (last) |
| 238 | 0 | 0 | $sep ||= ';' |
| 252 | 0 | 0 | $nodes[$i]->node_name || '' |
| 435 | 78 | 0 | shift @{$path;} || (last LEVEL) |
| 809 | 0 | 0 | $node->id_output || '' |
| 874 | 0 | 0 | $current_node->ancestor || (last) |
| 1155 | 3 | 0 | $column ||= 1 |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 356 | 49 | 0 | 0 | $ancestor or $reroot |
| 611 | 27 | 2 | 0 | shift() || $self->get_root_node |
| 615 | 10 | 17 | 2 | @descs == 2 or @descs == 0 |
| 692 | 11 | 1 | 0 | shift() || $self->get_root_node |
| 710 | 0 | 2 | 0 | @artificials or $node |
| 723 | 7 | 1 | 0 | shift @working || $node->new('-id', 'artificial_' . ++$self->{'_art_num'}) |
| 788 | 0 | 0 | 0 | $key eq '_desc' or $key eq '_ancestor' |
| 811 | 0 | 0 | 0 | exists ${$paired;}{join $", @data} or @data == 1 |
| 1173 | 0 | 0 | 51 | not defined $id or $id eq '' |
| 1177 | 17 | 1 | 33 | not defined $value or $value eq '' |