| line |
true |
false |
branch |
|
143
|
0 |
1 |
unless (defined $matrix and ref $matrix and $matrix->isa('Bio::Matrix::MatrixI')) |
|
150
|
1 |
0 |
if ($method =~ /NJ/i) { } |
|
|
0 |
0 |
elsif ($method =~ /UPGMA/i) { } |
|
191
|
0 |
1 |
if ($N < 2) { } |
|
|
0 |
1 |
elsif ($N == 2) { } |
|
220
|
55 |
99 |
unless defined $nodes[$i] |
|
222
|
65 |
451 |
unless defined $nodes[$j] |
|
224
|
32 |
419 |
if (not defined $min or $dist <= $min) |
|
236
|
0 |
11 |
if ($dist_i < 0) { } |
|
|
0 |
11 |
elsif ($dist_j < 0) { } |
|
239
|
0 |
0 |
if $dist_j < 0 |
|
243
|
0 |
0 |
if $dist_i < 0 |
|
259
|
66 |
88 |
unless defined $nodes[$m] |
|
260
|
77 |
11 |
if ($m != $mini) |
|
300
|
3 |
11 |
if (defined $nodes[$k]) |
|
314
|
0 |
1 |
if ($dist_i < 0) { } |
|
|
0 |
1 |
elsif ($dist_j < 0) { } |
|
|
0 |
1 |
elsif ($dist_k < 0) { } |
|
318
|
0 |
0 |
if ($dist_j < 0) { } |
|
|
0 |
0 |
elsif ($dist_k < 0) { } |
|
321
|
0 |
0 |
if $dist_k < 0 |
|
325
|
0 |
0 |
if $dist_j < 0 |
|
331
|
0 |
0 |
if ($dist_i < 0) { } |
|
|
0 |
0 |
elsif ($dist_k < 0) { } |
|
334
|
0 |
0 |
if $dist_k < 0 |
|
338
|
0 |
0 |
if $dist_i < 0 |
|
344
|
0 |
0 |
if ($dist_i < 0) { } |
|
|
0 |
0 |
elsif ($dist_j < 0) { } |
|
347
|
0 |
0 |
if $dist_j < 0 |
|
351
|
0 |
0 |
if $dist_i < 0 |
|
405
|
0 |
0 |
if (not defined $min or $d <= $min) |
|
406
|
0 |
0 |
if (defined $min and $min == $d) { } |
|
420
|
0 |
0 |
unless (defined $min) |
|
424
|
0 |
0 |
if (not defined $min or $dij <= $min) |
|
426
|
0 |
0 |
if (defined $min and $min == $dij) { } |
|
446
|
0 |
0 |
unless (defined $nodes[$nid]) |
|
461
|
0 |
0 |
if ($y != $K) |
|
472
|
0 |
0 |
if ($i != $x) { } |
|
503
|
0 |
0 |
if (not defined $distances->[$i_id][$j_id]) { } |
|
528
|
1 |
1 |
if @_ |
|
554
|
0 |
0 |
unless $len >= 4 |
|
566
|
0 |
0 |
unless ($DijDkm == $DikDjm and $DijDkm >= $DimDjk or $DijDkm == $DimDjk and $DijDkm >= $DikDjm or $DikDjm == $DimDjk and $DikDjm >= $DijDkm) |