| line |
true |
false |
branch |
|
140
|
0 |
16 |
if ($method and not $method =~ /TargetP/i) |
|
162
|
2 |
31 |
if (defined $net) |
|
186
|
2 |
0 |
if (defined $cleavage) |
|
187
|
0 |
2 |
$cleavage =~ /not included/ ? : |
|
208
|
1 |
15 |
unless ($self->_parsed) |
|
231
|
0 |
15 |
unless $feat and ref $feat eq 'HASH' |
|
240
|
15 |
0 |
if (defined $feat->{'seqlen'}) |
|
244
|
15 |
0 |
if exists $$MAPLOC{$feat->{'loc'}} |
|
245
|
0 |
15 |
if defined $feat->{'cTP'} |
|
246
|
15 |
0 |
if defined $feat->{'mTP'} |
|
247
|
15 |
0 |
if defined $feat->{'SP'} |
|
248
|
15 |
0 |
if defined $feat->{'other'} |
|
249
|
15 |
0 |
if defined $feat->{'RC'} |
|
250
|
4 |
11 |
if defined $feat->{'TPLen'} |
|
338
|
1 |
16 |
if (defined $value) |
|
378
|
2 |
13 |
if ($line =~ /targetp (v[\d\.]+)/) { } |
|
|
2 |
11 |
elsif ($line =~ /Cleavage site predictions (.*)/) { } |
|
|
2 |
9 |
elsif ($line =~ /Using (\S+) networks/) { } |
|
|
2 |
7 |
elsif ($line =~ /^Name/) { } |
|
399
|
2 |
15 |
if $line =~ /^----/ |
|
429
|
0 |
15 |
unless $line |
|
434
|
15 |
0 |
if ($self->network eq 'NON-PLANT') { } |
|
452
|
4 |
11 |
$TPlen && $TPlen =~ /\d+/ ? : |
|
474
|
0 |
15 |
unless $feature->isa('Bio::SeqFeature::Generic') |
|
499
|
15 |
0 |
if ($key and exists $MAPLOC->{$key}) |