| line |
true |
false |
branch |
|
308
|
1 |
1 |
if defined $threshold |
|
309
|
0 |
2 |
if $matrix |
|
310
|
1 |
1 |
if $seq |
|
334
|
2 |
6 |
if (defined $value) |
|
335
|
0 |
2 |
unless $value =~ /^[+-]?[\d\.]+$/ |
|
359
|
2 |
5 |
if (defined $value) |
|
360
|
0 |
2 |
unless $value eq 'eucaryotic' or $value eq 'procaryotic' |
|
382
|
2 |
12 |
if (defined $value) |
|
383
|
1 |
1 |
if ($value->isa('Bio::PrimarySeqI')) { } |
|
447
|
52 |
212 |
0 > $seqPos + $pVal ? : |
|
448
|
260 |
4 |
$seqPos + $nVal - 1 < $seqEnd ? : |
|
456
|
3596 |
0 |
if ($matrix eq 'eucaryotic') { } |
|
457
|
3592 |
4 |
if defined $Bio::Tools::Sigcleave::WeightTable_euc{$c}[$k] |
|
459
|
0 |
0 |
if defined $Bio::Tools::Sigcleave::WeightTable_pro{$c}[$k] |
|
462
|
20 |
244 |
if $weight >= $minWeight |
|
564
|
1 |
0 |
if ($hitcount > 0) |
|
568
|
5 |
0 |
if $start < 1 |
|
583
|
1 |
4 |
if ($hitcount > 1 and $cnt == 1) |