Bio/Species.pm | |||
---|---|---|---|
Criterion | Covered | Total | % |
condition | 29 | 48 | 60.4 |
line | !l | l&&!r | l&&r | condition |
---|---|---|---|---|
142 | 235 | 0 | 16 | defined $classification and ref $classification eq 'ARRAY' |
235 | 0 | 16 | defined $classification and ref $classification eq 'ARRAY' and @{$classification;} | |
191 | 42 | 210 | 0 | $name and not $name =~ /$species/i || $name =~ /$genus/i |
252 | 0 | 0 | $name and not $name =~ /$species/i || $name =~ /$genus/i and not $name =~ /$genus $species/i | |
304 | 18 | 0 | 43 | @spflds > 1 and $root->node_name ne 'Viruses' |
339 | 0 | 172 | 0 | $genus and $genus =~ /$_/i |
350 | 2 | 41 | 0 | not $unconv || $sub_species and $species =~ s/^(\w+)\s(\w+)$/$1/ |
506 | 105 | 0 | 3 | defined $full and $full =~ /full/i |
line | l | !l | condition |
---|---|---|---|
186 | 251 | 1 | $vals[1] ||= '' |
223 | 2863 | 1 | $node->scientific_name || (next) |
494 | 108 | 0 | $self->taxon->rank || 'no rank' |
line | l | !l&&r | !l&&!r | condition |
---|---|---|---|---|
191 | 210 | 0 | 0 | $name =~ /$species/i || $name =~ /$genus/i |
350 | 0 | 2 | 41 | $unconv || $sub_species |
623 | 251 | 0 | 1733 | not $self->{'taxon'} or $taxon |
624 | 251 | 0 | 0 | $taxon ||= 'Bio::Taxon'->new |
643 | 251 | 236 | 743 | not $self->{'tree'} or $tree |
644 | 487 | 0 | 0 | $tree ||= 'Bio::Tree::Tree'->new |