| line |
true |
false |
branch |
|
101
|
1 |
0 |
unless (defined $self->sequence_factory) |
|
111
|
1 |
0 |
unless $self->{'_seendata'}{'_seqs'} |
|
|
0 |
1 |
if (@{[] unless $self->{'_seendata'}{'_seqs'};} or eof $self->_fh) |
|
140
|
25 |
1 |
defined $self->{'_seendata'}{'_seqs'}[-1] ? : |
|
143
|
1 |
25 |
if ($name eq 'ASSEMBLY') { } |
|
|
1 |
24 |
elsif ($name eq 'HEADER') { } |
|
|
1 |
23 |
elsif ($name eq 'CLONE_NAME') { } |
|
|
1 |
22 |
elsif ($name eq 'ORGANISM') { } |
|
|
1 |
21 |
elsif ($name eq 'AUTHOR_LIST') { } |
|
|
2 |
19 |
elsif ($name eq 'TU') { } |
|
|
2 |
17 |
elsif ($name eq 'MODEL') { } |
|
|
8 |
9 |
elsif ($name eq 'EXON') { } |
|
|
2 |
7 |
elsif ($name eq 'PROTEIN_SEQ') { } |
|
|
7 |
0 |
elsif ($name eq 'CDS') { } |
|
|
0 |
0 |
elsif ($name eq 'RNA-EXON') { } |
|
|
0 |
0 |
elsif ($name eq 'PRE-TRNA') { } |
|
|
0 |
0 |
elsif ($name eq 'TRNA') { } |
|
|
0 |
0 |
elsif ($name eq 'REPEAT_LIST') { } |
|
|
0 |
0 |
elsif ($name eq 'REPEAT') { } |
|
|
0 |
0 |
elsif ($name eq 'AUTHOR') { } |
|
|
0 |
0 |
elsif ($name eq 'GB_DESCRIPTION') { } |
|
|
0 |
0 |
elsif ($name eq 'GB_COMMENT') { } |
|
|
0 |
0 |
elsif ($name eq 'LINEAGE') { } |
|
159
|
1 |
1 |
if ($s > $e) |
|
188
|
1 |
1 |
if ($s > $e) |
|
211
|
6 |
2 |
if ($s > $e) |
|
238
|
6 |
1 |
if ($s > $e) |
|
262
|
0 |
0 |
if ($s > $e) |
|
284
|
0 |
0 |
if ($s > $e) |
|
302
|
0 |
0 |
if ($s > $e) |
|
329
|
0 |
0 |
if ($s > $e) |
|
363
|
1 |
25 |
if ($name eq 'AUTHOR_LIST') { } |
|
|
1 |
24 |
elsif ($name eq 'ASSEMBLY') { } |
|
|
2 |
22 |
elsif ($name eq 'TU' or $name eq 'TRNA' or $name eq 'PRE-TRNA' or $name eq 'REPEAT') { } |
|
|
2 |
20 |
elsif ($name eq 'MODEL') { } |
|
364
|
1 |
0 |
if ($curseq->can('annotation')) |
|
372
|
0 |
1 |
unless $self->{'_seendata'}{'_feats'} |
|
|
0 |
1 |
if (@{[] unless $self->{'_seendata'}{'_feats'};}) |
|
399
|
0 |
2 |
if (not defined $cdsexon) { } |
|
|
0 |
2 |
elsif (not defined $exon) { } |
|
413
|
2 |
1 |
$exon->strand > 0 ? : |
|
423
|
2 |
1 |
if ($utr->primary_tag eq 'five_prime_UTR') { } |
|
442
|
0 |
2 |
if (not defined $cdsexon) { } |
|
|
0 |
2 |
elsif (not defined $exon) { } |
|
456
|
1 |
1 |
$exon->strand < 0 ? : |
|
467
|
1 |
1 |
if ($utr->primary_tag eq 'three_prime_UTR') { } |
|
486
|
0 |
44 |
if (not @{$self->{'_state'};}) { } |
|
492
|
44 |
0 |
if (defined $curseq) |
|
493
|
1 |
43 |
if ($name eq 'CLONE_NAME') { } |
|
|
1 |
42 |
elsif ($name eq 'ORGANISM') { } |
|
|
0 |
42 |
elsif ($name eq 'LINEAGE') { } |
|
|
0 |
42 |
elsif ($name eq 'AUTHOR') { } |
|
516
|
33 |
11 |
if (defined $curfeat) |
|
517
|
15 |
18 |
if ($name eq 'EXON') { } |
|
|
0 |
18 |
elsif ($name eq 'RNA-EXON') { } |
|
|
2 |
16 |
elsif ($name eq 'PROTEIN_SEQ') { } |
|
|
0 |
16 |
elsif ($name eq 'CDS') { } |
|
|
0 |
16 |
elsif ($name eq 'PRE-TRNA') { } |
|
|
0 |
16 |
elsif ($name eq 'TRNA') { } |
|
|
0 |
16 |
elsif ($name eq 'REPEAT_LIST') { } |
|
|
0 |
16 |
elsif ($name eq 'REPEAT') { } |
|
|
0 |
16 |
elsif ($name eq 'GB_COMMENT') { } |
|
|
0 |
16 |
elsif ($name eq 'GB_DESCRIPTION') { } |
|
543
|
0 |
14 |
unless $test |