| line |
true |
false |
branch |
|
106
|
3 |
0 |
unless (defined $self->sequence_factory) |
|
141
|
3 |
0 |
if (ref $self->{'_filehandle'} eq 'GLOB') { } |
|
201
|
3 |
30 |
if ($mbs_info_line[$word] eq '-t') { } |
|
|
3 |
27 |
elsif ($mbs_info_line[$word] eq '-r') { } |
|
|
3 |
24 |
elsif ($mbs_info_line[$word] eq '-s') { } |
|
|
3 |
21 |
elsif ($mbs_info_line[$word] eq '-f') { } |
|
248
|
0 |
3 |
if (defined $self->{'SEGSITES'}) { } |
|
522
|
1 |
0 |
if ($self->{'NO_OUTGROUP'}) { } |
|
543
|
1 |
42 |
unless defined $seqstring |
|
596
|
8 |
39 |
if ($self->{'TOT_RUN_HAPS'} == $self->{'LAST_READ_HAP_NUM'} + 1) |
|
636
|
0 |
37 |
unless defined $seq |
|
689
|
0 |
50 |
unless (defined $fh) |
|
691
|
0 |
50 |
unless (defined $times and $times > 0) |
|
695
|
8 |
42 |
if (defined $self->{'BUFFER_HAP'}) |
|
706
|
2 |
40 |
unless defined $data |
|
715
|
0 |
40 |
if ($data eq '//') |
|
721
|
11 |
39 |
if ($end_run) |
|
735
|
2 |
9 |
unless (defined $data) |
|
743
|
0 |
3 |
unless (defined $data) |
|
749
|
9 |
0 |
if ($data =~ m[^//]) { } |
|
768
|
9 |
18 |
if ($_ eq '1') { } |
|
|
9 |
9 |
elsif ($_ eq '2') { } |
|
775
|
0 |
9 |
unless (defined $data) |