| line |
true |
false |
branch |
|
119
|
20 |
0 |
if ($swq and ref $swq eq 'Bio::Seq::Quality') { } |
|
127
|
5 |
15 |
if (not $acc_a) { } |
|
138
|
3 |
17 |
if (not $trace_a) { } |
|
178
|
0 |
518822 |
unless ($base_channel) |
|
182
|
0 |
518822 |
unless ($base_channel =~ /[acgt]/) |
|
185
|
84 |
518738 |
if ($values) |
|
186
|
40 |
44 |
if (ref $values eq 'ARRAY') { } |
|
194
|
518822 |
0 |
if ($self->{'trace'}{$base_channel}) { } |
|
215
|
17 |
1522 |
if ($peak_indices) |
|
216
|
6 |
11 |
if (ref $peak_indices eq 'ARRAY') { } |
|
224
|
3 |
1536 |
unless ($self->{'peak_indices'}) |
|
278
|
133 |
1158 |
if ($value) |
|
279
|
2 |
131 |
if ($value eq 'null') { } |
|
331
|
0 |
11 |
if (defined $value) |
|
361
|
0 |
1 |
if (defined $acc) { } |
|
365
|
0 |
1 |
unless defined $acc |
|
389
|
1 |
1 |
if ($value) |
|
412
|
1 |
1 |
if (defined $value) |
|
433
|
0 |
36 |
unless ($self) |
|
434
|
10 |
26 |
if (defined $value) |
|
463
|
0 |
49 |
if (defined $value) |
|
493
|
0 |
9 |
if (defined $value) |
|
668
|
0 |
6 |
if ($start > $end) |
|
672
|
0 |
6 |
if ($start <= 0 or $end > $self->length) |
|
702
|
0 |
57504 |
if ($start > $end) |
|
706
|
0 |
57504 |
if ($start <= 0 or $end > $self->trace_length) |
|
734
|
0 |
57516 |
unless ($self->trace('a') and $self->trace('t') and $self->trace('g') and $self->trace('c')) |
|
742
|
57516 |
0 |
if ($lengtha == $lengtht and $lengtha == $lengthg and $lengtha == $lengthc) |
|
851
|
0 |
82 |
if ($current_base =~ /N/) |
|
936
|
1066 |
56429 |
if ($value) |
|
993
|
61 |
72 |
if ($value) |
|
994
|
60 |
1 |
if (ref $value eq 'ARRAY') { } |
|
1098
|
736 |
4425 |
if ($value) |
|
1099
|
552 |
184 |
if ($value eq 'null') { } |