| line |
true |
false |
branch |
|
179
|
0 |
10 |
if (defined $id and defined $given_id) |
|
180
|
0 |
0 |
if ($id ne $given_id) |
|
184
|
1 |
9 |
if (defined $given_id) |
|
189
|
4 |
6 |
if (not $seq) { } |
|
|
2 |
4 |
elsif ($seq->isa('Bio::PrimarySeqI') or $seq->isa('Bio::SeqI')) { } |
|
|
0 |
4 |
elsif (ref $seq) { } |
|
191
|
0 |
4 |
unless ($self->{'suppress_warnings'} == 1) |
|
196
|
1 |
3 |
unless ($alphabet) |
|
223
|
0 |
9 |
if (not defined $qual) { } |
|
|
2 |
7 |
elsif (ref $qual eq 'Bio::Seq::PrimaryQual') { } |
|
261
|
0 |
8 |
unless $self->{'seq_ref'} and $self->{'qual_ref'} |
|
263
|
6 |
2 |
unless $sid |
|
264
|
1 |
1 |
unless $self->{'qual_ref'}->display_id |
|
265
|
1 |
0 |
if $sid eq $self->{'qual_ref'}->display_id |
|
299
|
9 |
0 |
if $self->{'seq_ref'} or $self->{'qual_ref'} |
|
302
|
0 |
0 |
unless $acc |
|
304
|
0 |
0 |
if $acc eq $self->{'qual_ref'}->accession_number |
|
322
|
9 |
0 |
if $self->{'seq_ref'} or $self->{'qual_ref'} |
|
324
|
0 |
0 |
unless $pid |
|
325
|
0 |
0 |
if $pid eq $self->{'qual_ref'}->primary_id |
|
343
|
9 |
0 |
if $self->{'seq_ref'} or $self->{'qual_ref'} |
|
345
|
0 |
0 |
unless $des |
|
346
|
0 |
0 |
if $des eq $self->{'qual_ref'}->desc |
|
366
|
0 |
0 |
if $self->{'seq_ref'} or $self->{'qual_ref'} |
|
415
|
3 |
15 |
if (defined $value) |
|
445
|
0 |
0 |
if (defined $acc) { } |
|
449
|
0 |
0 |
unless defined $acc |
|
472
|
0 |
0 |
if ($value) |
|
495
|
0 |
0 |
if (defined $value) |
|
516
|
0 |
0 |
unless ($self) |
|
517
|
0 |
0 |
if (defined $value) |
|
545
|
2 |
2 |
if (defined $value) |
|
576
|
4 |
2 |
if (defined $value) |
|
610
|
0 |
0 |
if (defined $value) |
|
634
|
0 |
21 |
unless ($self->{'seq_ref'}) |
|
635
|
0 |
0 |
unless ($self->{'suppress_warnings'} == 1) |
|
640
|
0 |
21 |
unless ($self->{'qual_ref'}) |
|
641
|
0 |
0 |
unless ($self->{'suppress_warnings'} == 1) |
|
648
|
6 |
15 |
if ($seql != $self->{'qual_ref'}->length) { } |
|
649
|
0 |
6 |
unless ($self->{'suppress_warnings'} == 1) |
|
677
|
1 |
1 |
if (defined $value) |
|
678
|
1 |
0 |
if (ref $value eq 'Bio::Seq::PrimaryQual') { } |
|
710
|
1 |
1 |
if (defined $value) |
|
711
|
1 |
0 |
if (ref $value eq 'Bio::PrimarySeq') { } |
|
746
|
8 |
1 |
unless ($self->display_id) |
|
747
|
1 |
7 |
if ($c_id = $self->_common_id) { } |
|
749
|
7 |
0 |
if ($self->{'seq_ref'}) { } |
|
|
0 |
0 |
elsif ($self->{'qual_ref'}) { } |
|
758
|
0 |
9 |
if ($acc) { } |
|
|
0 |
9 |
elsif ($c_acc = $self->_common_accession_number) { } |
|
760
|
0 |
9 |
if ($pid) { } |
|
|
0 |
9 |
elsif ($c_pid = $self->_common_primary_id) { } |
|
762
|
0 |
9 |
if ($desc) { } |
|
|
0 |
9 |
elsif ($c_desc = $self->_common_desc) { } |
|
898
|
0 |
0 |
unless ($result) |