| line |
true |
false |
branch |
|
121
|
1 |
7 |
if ($seq) |
|
126
|
0 |
8 |
exists $params{'-mapping'} ? : |
|
132
|
8 |
0 |
if $tfh |
|
133
|
8 |
0 |
if $file |
|
135
|
1 |
7 |
if $seq |
|
155
|
24 |
122 |
if (defined $value) |
|
159
|
146 |
0 |
defined $obj->{'length'} ? : |
|
176
|
1 |
49 |
if (defined $data) |
|
177
|
1 |
0 |
if ($self->length == 0) { } |
|
204
|
0 |
50 |
if (ref $start and $start->isa('Bio::LocationI')) |
|
206
|
0 |
0 |
if ($loc->length == 0) { } |
|
|
0 |
0 |
elsif ($loc->end < $loc->start) { } |
|
214
|
0 |
0 |
if ($loc->isa('Bio::Location::SplitLocationI')) { } |
|
216
|
0 |
0 |
unless (seek $fh, $subloc->start - 1, 0) |
|
220
|
0 |
0 |
unless (defined $ret) |
|
223
|
0 |
0 |
if ($subloc->strand < 0) |
|
230
|
0 |
0 |
unless (seek $fh, $loc->start - 1, 0) |
|
235
|
0 |
0 |
unless (defined $ret) |
|
241
|
0 |
0 |
if (defined $loc->strand and $loc->strand < 0) |
|
248
|
0 |
50 |
if ($start <= 0 or $end > $self->length) |
|
252
|
0 |
50 |
if ($end < $start) |
|
256
|
0 |
50 |
unless (seek $fh, $start - 1, 0) |
|
260
|
0 |
50 |
unless (defined $ret) |
|
283
|
0 |
8 |
unless (seek $fh, 0, 2) |
|
305
|
16 |
44 |
if (defined $value) |
|
327
|
0 |
0 |
if (defined $value) |
|
337
|
8 |
2 |
if defined $fh |
|
339
|
8 |
2 |
if defined $self->_filename and -e $self->_filename |