| line |
true |
false |
branch |
|
167
|
5 |
12 |
if ($state == -1) { } |
|
|
0 |
12 |
elsif (not defined $curquery) { } |
|
184
|
0 |
5 |
if ($hstart < 0) |
|
185
|
0 |
5 |
if ($hend < 0) |
|
186
|
0 |
5 |
if ($qstart < 0) |
|
187
|
0 |
5 |
if ($qend < 0) |
|
189
|
0 |
5 |
unless (defined $alnlen) |
|
195
|
1 |
4 |
if (defined $curquery and $curquery ne $qid) |
|
203
|
0 |
4 |
if (defined $curhit and $curhit ne $hacc) { } |
|
|
2 |
2 |
elsif (not defined $curquery) { } |
|
236
|
0 |
4 |
if ($qstrand eq '-') |
|
239
|
0 |
4 |
if ($hstrand eq '-') |
|
259
|
0 |
0 |
unless $_ =~ /^\s+$/ |
|
265
|
4 |
8 |
if ($state >= scalar @Bio::SearchIO::waba::STATES) |
|
271
|
1 |
1 |
if (defined $curquery) |
|
294
|
8 |
56 |
if (my $type = $Bio::SearchIO::waba::MODEMAP{$nm}) |
|
296
|
8 |
0 |
if ($self->_eventHandler->will_handle($type)) |
|
302
|
2 |
62 |
if ($nm eq 'WABAOutput') |
|
327
|
4 |
60 |
if ($nm eq 'Hsp') |
|
335
|
8 |
56 |
if (my $type = $Bio::SearchIO::waba::MODEMAP{$nm}) { } |
|
|
56 |
0 |
elsif ($Bio::SearchIO::waba::MAPPING{$nm}) { } |
|
336
|
8 |
0 |
if ($self->_eventHandler->will_handle($type)) |
|
344
|
0 |
56 |
if (ref($Bio::SearchIO::waba::MAPPING{$nm}) =~ /hash/i) { } |
|
355
|
2 |
62 |
if $nm eq 'WABAOutput' |
|
393
|
4 |
52 |
unless defined $data->{'Data'} |
|
394
|
0 |
52 |
if ($data->{'Data'} =~ /^\s+$/) |
|
395
|
0 |
0 |
unless $data->{'Name'} =~ /Hsp\_(midline|qseq|hseq)/ |
|
398
|
16 |
36 |
if ($self->in_element('hsp') and $data->{'Name'} =~ /Hsp\_(qseq|hseq|midline)/) |
|
421
|
8 |
0 |
if (defined $value) |
|
444
|
0 |
0 |
if not defined $name || defined $self->{'_elements'} or scalar @{$self->{'_elements'};} == 0 |
|
446
|
0 |
0 |
if ($_ eq $name) |
|
468
|
0 |
52 |
unless defined $self->{'_elements'}[0] |