| line |
true |
false |
branch |
|
189
|
1 |
0 |
if $accession |
|
220
|
3 |
13 |
if $line =~ /^\s*$/ |
|
221
|
1 |
12 |
if ($line =~ /^Training\sset:\s+"(.*)"/mosx) { } |
|
|
2 |
10 |
elsif ($line =~ /^>(\S+)\s+(.*)/mosx) { } |
|
|
4 |
6 |
elsif (index($line, 'FW') == 0 or index($line, 'RC') == 0) { } |
|
222
|
0 |
1 |
if ($seentop) |
|
237
|
2 |
7 |
if $line =~ /^\s*$/ |
|
238
|
1 |
6 |
if (index($line, '>') == 0 or index($line, '-------- at level 1 --------') == 0) |
|
243
|
1 |
5 |
if ($line =~ /^\s+(\d+\ssequences\sof\slength\s\d+)/mosx) { } |
|
|
1 |
4 |
elsif ($line =~ /^Cutoff:\s+(\S+)/mosx) { } |
|
|
1 |
3 |
elsif ($line =~ /^Database:\s+"(.*)"/mosx) { } |
|
|
0 |
3 |
elsif ($line =~ /^\s+(\d+)\snucleotides\sto\sbe\sprocessed\sin\s(\d+)\ssequences/mosx) { } |
|
|
1 |
2 |
elsif ($line =~ /^E-value\sat\scutoff\s\S+\sfor\s\S+\sdouble\sstrand\sdata:\s+(\S+)/mosx) { } |
|
|
1 |
1 |
elsif ($line =~ /^\s+(ATGC\sratios:\s+(?:\S+\s+\S+\s+\S+\s+\S+))/) { } |
|
280
|
1 |
1 |
if (not $lasthit or $id ne $lasthit) |
|
281
|
0 |
1 |
if ($self->within_element('hit')) |
|
292
|
0 |
0 |
$acc ? : |
|
|
1 |
0 |
$ver ? : |
|
303
|
4 |
0 |
if ($minscore < $score) |
|
307
|
3 |
1 |
if $str eq 'RC' |
|
323
|
2 |
2 |
if not $lastscore or $lastscore < $score |
|
324
|
2 |
2 |
if not $lasteval or $lasteval > $eval |
|
330
|
1 |
0 |
if ($seentop) |
|
331
|
1 |
0 |
if ($self->within_element('hit')) |
|
360
|
6 |
0 |
if ($type) |
|
361
|
6 |
0 |
if ($self->_eventHandler->will_handle($type)) |
|
367
|
1 |
5 |
if (defined $type and $type eq 'result') |
|
392
|
6 |
5 |
if ($type) { } |
|
|
5 |
0 |
elsif ($MAPPING{$nm}) { } |
|
393
|
6 |
0 |
if ($self->_eventHandler->will_handle($type)) |
|
401
|
3 |
2 |
if (ref($MAPPING{$nm}) =~ /hash/i) { } |
|
415
|
1 |
10 |
if defined $type and $type eq 'result' |
|
452
|
0 |
7 |
unless $data and ref $data |
|
454
|
0 |
51 |
if $data->{$nm} and $data->{$nm} =~ /^\s*$/o |
|
455
|
51 |
0 |
if ($MAPPING{$nm}) |
|
456
|
0 |
51 |
if (ref($MAPPING{$nm}) =~ /hash/i) { } |
|
481
|
0 |
5 |
unless defined $data->{'Data'} and not $data->{'Data'} =~ /^\s+$/o |
|
502
|
0 |
2 |
if not defined $name && defined $self->{'_elements'} or scalar @{$self->{'_elements'};} == 0 |
|
504
|
1 |
1 |
if $_ eq $name |
|
523
|
0 |
0 |
unless defined $self->{'_elements'}[0] |
|
588
|
1 |
1 |
if @_ |
|
604
|
1 |
1 |
if @_ |
|
620
|
1 |
1 |
if @_ |