| Bio/SearchIO/Writer/HTMLResultWriter.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 27 | 85 | 31.7 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 185 | 0 | 0 | 82 | defined $type and $type =~ /^(P|N)/i |
| 219 | 1 | 0 | 0 | defined $resultfilter and not &{$resultfilter;}($result) |
| 272 | 20 | 0 | 0 | $hitfilter and not &{$hitfilter;}($hit) |
| 319 | 21 | 0 | 0 | $hspfilter and not &{$hspfilter;}($hsp) |
| 373 | 0 | 21 | 0 | defined $hframe and not defined $qframe |
| 0 | 21 | 0 | defined $qframe and not defined $hframe | |
| 383 | 0 | 0 | 21 | $links and $hsp->can('links') |
| 0 | 21 | 0 | $links and $hsp->can('links') and defined(my $lnks = $hsp->links) | |
| 919 | 0 | 0 | 0 | defined $result and ref $result |
| 0 | 0 | 0 | defined $result and ref $result and $result->isa('Bio::Search::Result::ResultI') |
| line | l | !l | condition |
|---|---|---|---|
| 213 | 1 | 0 | $num ||= 0 |
| 320 | 21 | 0 | $hsp->evalue || '' |
| 390 | 21 | 0 | $qstrand || 1 |
| 21 | 0 | $hstrand || 1 | |
| 513 | 0 | 20 | $self->{'_hit_link_desc'} || \&Bio::SearchIO::Writer::HTMLResultWriter::default_hit_link_desc |
| 579 | 0 | 20 | $self->{'_hit_link_align'} || \&Bio::SearchIO::Writer::HTMLResultWriter::default_hit_link_desc |
| 600 | 0 | 20 | $self->{'_hit_desc_line'} || \&Bio::SearchIO::Writer::HTMLResultWriter::default_hit_desc_line |
| 679 | 0 | 1 | $self->{'_start_report'} || \&Bio::SearchIO::Writer::HTMLResultWriter::default_start_report |
| 729 | 0 | 1 | $self->{'_title'} || \&Bio::SearchIO::Writer::HTMLResultWriter::default_title |
| 780 | 0 | 1 | $self->{'_introduction'} || \&Bio::SearchIO::Writer::HTMLResultWriter::default_introduction |
| 859 | 0 | 60 | $self->{'_id_parser'} || \&Bio::SearchIO::Writer::HTMLResultWriter::default_id_parser |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 153 | 0 | 1 | 0 | $p || $Bio::SearchIO::Writer::HTMLResultWriter::RemoteURLDefault{'PROTEIN'} |
| 154 | 0 | 1 | 0 | $n || $Bio::SearchIO::Writer::HTMLResultWriter::RemoteURLDefault{'NUCLEOTIDE'} |
| 224 | 0 | 0 | 0 | $alg =~ /(FAST|BLAST)N/i or $alg =~ /(WABA|EXONERATE)/i |
| 0 | 0 | 0 | $alg =~ /(FAST|BLAST)P/ or $alg =~ /SSEARCH|HMM(PFAM|SEARCH)/i | |
| 259 | 1 | 0 | 0 | $result->algorithm_reference || $self->algorithm_reference($result) |
| 320 | 21 | 0 | 0 | $hsp->bits || $hsp->score |
| 21 | 0 | 0 | $hsp->score || $hsp->bits | |
| 354 | 21 | 0 | 0 | $hstrand or $qstrand |
| 469 | 1 | 0 | 0 | $pav or $sav |
| 544 | 0 | 40 | 0 | $gi || $acc |
| 641 | 0 | 0 | 0 | $gi || $acc || $db |