| line |
true |
false |
branch |
|
152
|
0 |
55 |
unless $parent or $chunk |
|
154
|
55 |
0 |
if $parent |
|
156
|
39 |
16 |
if ($chunk) |
|
158
|
39 |
0 |
if (ref $chunk eq 'ARRAY') { } |
|
167
|
55 |
0 |
if $hit_data |
|
172
|
55 |
55 |
if (@_) |
|
428
|
0 |
52 |
if $seqType eq 'sbjct' |
|
431
|
33 |
19 |
unless (defined $self->{$storage_name}) |
|
439
|
23 |
10 |
if (@inds and $class ne 'gap') |
|
448
|
2 |
50 |
$collapse ? : |
|
482
|
0 |
3 |
if (@_) |
|
592
|
1 |
7 |
if $type eq 'sbjct' |
|
593
|
4 |
4 |
if ($type eq 'query') { } |
|
|
4 |
0 |
elsif ($type eq 'hit') { } |
|
630
|
0 |
3 |
if $self->has_field('accession') |
|
631
|
3 |
0 |
if $self->has_field('description') |
|
632
|
3 |
0 |
unless $accession or $desc |
|
635
|
0 |
0 |
if $accession |
|
637
|
0 |
0 |
if (defined $desc) |
|
641
|
0 |
0 |
if ($id =~ /(?:gb|emb|dbj|sp|pdb|bbs|ref|tp[gde])\|(.*)\|(?:.*)/) { } |
|
|
0 |
0 |
elsif ($id =~ /(?:pir|prf|pat|gnl)\|(?:.*)\|(.*)/) { } |
|
|
0 |
0 |
elsif ($id =~ /(?:gim|gi|bbm|bbs|lcl)\|(?:\d*)/) { } |
|
|
0 |
0 |
elsif ($id =~ /(?:oth)\|(.*)\|(?:.*)\|(?:.*)/) { } |
|
679
|
0 |
3 |
if (@_) |
|
774
|
1 |
10 |
if $seqType eq 'sbjct' |
|
812
|
0 |
0 |
wantarray ? : |
|
813
|
0 |
5 |
if $seqType eq 'sbjct' |
|
815
|
0 |
5 |
if ($seqType =~ /list|array/i) { } |
|
|
1 |
4 |
elsif ($seqType eq 'total') { } |
|
856
|
0 |
6 |
if $seqType eq 'sbjct' |
|
858
|
3 |
3 |
unless (exists $self->{'_id_matches'}) |
|
862
|
3 |
3 |
unless (exists $self->{'_con_matches'}) |
|
871
|
80 |
20 |
unless (exists $identicals{$_}) |
|
880
|
6 |
0 |
if ($class) { } |
|
884
|
4 |
2 |
if ($class =~ /^id/i) { } |
|
916
|
0 |
12 |
unless ($self->get_field('num_hsps')) |
|
921
|
0 |
3 |
wantarray ? : |
|
922
|
1 |
11 |
if $seqType eq 'sbjct' |
|
924
|
0 |
12 |
if ($seqType =~ /list|array/i) { } |
|
|
5 |
7 |
elsif ($seqType eq 'hit') { } |
|
|
7 |
0 |
elsif ($seqType eq 'query') { } |
|
960
|
0 |
12 |
unless ($self->get_field('num_hsps')) |
|
965
|
0 |
3 |
wantarray ? : |
|
966
|
1 |
11 |
if $seqType eq 'sbjct' |
|
968
|
0 |
12 |
if ($seqType =~ /list|array/i) { } |
|
|
5 |
7 |
elsif ($seqType eq 'hit') { } |
|
|
7 |
0 |
elsif ($seqType eq 'query') { } |
|
1001
|
0 |
4 |
if $seqType eq 'sbjct' |
|
1023
|
0 |
3 |
if $seqType eq 'sbjct' |
|
1031
|
0 |
3 |
if $ratio_rounded == 1 and $ratio < 1 |
|
1053
|
0 |
1 |
if $seqType eq 'sbjct' |
|
1061
|
0 |
1 |
if $ratio_rounded == 1 and $ratio < 1 |