| line |
true |
false |
branch |
|
157
|
128 |
8 |
if ($self->_fields->{'query_strand'}) { } |
|
160
|
222 |
34 |
$self->_fields->{$strand_type} eq 'Plus' ? : |
|
168
|
6 |
130 |
if ($self->_fields->{'evalue'} =~ /^e/) |
|
173
|
119 |
17 |
unless $self->_fields->{'total_gaps'} |
|
187
|
0 |
489 |
unless $strip =~ /\s+(\d+)\s+(\S+)\s+(\d+)\s+(\S.+)\nSbjct:?\s+(\d+)\s+(\S+)\s+(\d+)/gm |
|
200
|
136 |
842 |
if (not defined $q_start or $q < $q_start) |
|
203
|
978 |
0 |
if (not defined $q_end or $q > $q_end) |
|
208
|
222 |
756 |
if (not defined $h_start or $h < $h_start) |
|
211
|
892 |
86 |
if (not defined $h_end or $h > $h_end) |
|
259
|
0 |
24590 |
if ($mchar eq '+' or $mchar eq '.' or $mchar eq ':') { } |
|
|
414 |
24176 |
elsif ($mchar eq ' ') { } |
|
272
|
4 |
24586 |
if ($qchar eq '-') { } |
|
278
|
5 |
24585 |
if ($schar eq '-') { } |
|
311
|
5 |
17 |
unless ($self->{'_created_query'}) |
|
342
|
4 |
27 |
unless ($self->{'_created_hit'}) |
|
377
|
10 |
4 |
if defined $type |
|
378
|
0 |
10 |
if not defined $type or $type eq 'hsp' or not $type =~ /query|hit|subject|sbjct|total/ |
|
379
|
0 |
14 |
if $type =~ /sbjct|subject/ |
|
381
|
4 |
10 |
if ($type eq 'total') |
|
383
|
1 |
3 |
unless $answer eq '[unset]' |
|
406
|
0 |
7 |
unless defined $val |
|
409
|
2 |
5 |
if ($val =~ /^q/i) { } |
|
|
5 |
0 |
elsif ($val =~ /^hi|^s/i) { } |
|
|
0 |
0 |
elsif ($val =~ /^list|array/i) { } |
|
439
|
9 |
0 |
wantarray ? : |
|
|
9 |
7 |
unless defined $val |
|
442
|
2 |
14 |
if ($val =~ /^q/i) { } |
|
|
5 |
9 |
elsif ($val =~ /^(hi|s)/i) { } |
|
|
9 |
0 |
elsif ($val =~ /^list|array/i) { } |
|
472
|
9 |
0 |
wantarray ? : |
|
|
9 |
7 |
unless defined $val |
|
475
|
5 |
11 |
if ($val =~ /^q/i) { } |
|
|
2 |
9 |
elsif ($val =~ /^(hi|s)/i) { } |
|
|
9 |
0 |
elsif ($val =~ /^list|array/i) { } |