| line |
true |
false |
branch |
|
121
|
0 |
5 |
defined $header ? : |
|
122
|
0 |
5 |
defined $fieldsep ? : |
|
146
|
0 |
124 |
unless defined $fieldname |
|
148
|
15 |
109 |
if @_ |
|
166
|
3 |
39 |
unless ($self->{'_parsed'}) |
|
195
|
0 |
2 |
unless @inds |
|
205
|
4 |
106 |
if /^\s*\#/ or /^\s+$/ or not length $_ |
|
208
|
0 |
106 |
unless (defined $sample) |
|
215
|
0 |
182 |
if ($convert_indels) |
|
216
|
0 |
0 |
if (length $allele > 1) { } |
|
|
0 |
0 |
elsif ($allele eq '-') { } |
|
231
|
39 |
67 |
unless (defined $inds{$sample}) |
|
255
|
0 |
22 |
unless (ref $ind and $ind->isa('Bio::PopGen::IndividualI')) |
|
261
|
0 |
440 |
unless defined $g |
|
285
|
0 |
2 |
unless (ref $pop and $pop->isa('Bio::PopGen::PopulationI')) |
|
291
|
0 |
17 |
unless (ref $ind and $ind->isa('Bio::PopGen::IndividualI')) |
|
297
|
0 |
340 |
unless defined $g |