Subroutine Coverage
| Bio/PopGen/HtSNP.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
40 |
46 |
86.9
|
| pod |
17 |
19 |
89.4
|
| line |
count |
pod |
subroutine |
|
310
|
1 |
n/a |
BEGIN |
|
311
|
1 |
n/a |
BEGIN |
|
313
|
1 |
n/a |
BEGIN |
|
314
|
1 |
n/a |
BEGIN |
|
317
|
1 |
n/a |
BEGIN |
|
341
|
1 |
Yes |
new |
|
392
|
3 |
Yes |
haplotype_block |
|
409
|
4 |
Yes |
snp_ids |
|
427
|
3 |
Yes |
pattern_freq |
|
447
|
1 |
n/a |
_check_input |
|
471
|
1 |
n/a |
_haplotype_length_error |
|
532
|
1 |
n/a |
_population_error |
|
619
|
1 |
n/a |
_do_it |
|
784
|
0 |
Yes |
input_block |
|
803
|
1 |
Yes |
hap_length |
|
823
|
0 |
Yes |
pop_freq |
|
843
|
1 |
Yes |
deg_snp |
|
863
|
0 |
Yes |
snp_type |
|
884
|
1 |
Yes |
silent_snp |
|
906
|
1 |
Yes |
useful_snp |
|
928
|
1 |
Yes |
ht_type |
|
949
|
0 |
No |
ht_set |
|
969
|
1 |
Yes |
snp_type_code |
|
991
|
0 |
Yes |
snp_and_code |
|
1013
|
1 |
Yes |
deg_pattern |
|
1034
|
0 |
Yes |
split_hap |
|
1052
|
1 |
n/a |
_split_haplo |
|
1083
|
1 |
n/a |
_to_upper_case |
|
1109
|
1 |
n/a |
_remove_deg |
|
1148
|
1 |
n/a |
_rem_silent_snp |
|
1187
|
1 |
n/a |
_find_silent_snps |
|
1230
|
1 |
n/a |
_find_indet |
|
1272
|
2 |
n/a |
_remove_col |
|
1295
|
2 |
n/a |
_remove_snp_id |
|
1315
|
1 |
n/a |
_find_deg_pattern |
|
1347
|
3 |
n/a |
_key_for_value |
|
1359
|
7 |
n/a |
_is_on_hash |
|
1372
|
45 |
n/a |
_is_there |
|
1398
|
2 |
n/a |
_keep_these_patterns |
|
1431
|
18 |
Yes |
compare_arrays |
|
1456
|
1 |
n/a |
_convert_to_numbers |
|
1515
|
1 |
n/a |
_snp_type_code |
|
1539
|
20 |
No |
get_position |
|
1568
|
1 |
n/a |
_alleles_number |
|
1607
|
1 |
n/a |
_htSNP |
|
1661
|
1 |
n/a |
_snp_and_code_summary |