| line |
!l |
l&&!r |
l&&r |
condition |
|
229
|
2 |
0 |
12 |
defined $input{'pA'} and defined $input{'pC'} |
|
|
2 |
0 |
12 |
defined $input{'pA'} and defined $input{'pC'} and defined $input{'pG'} |
|
|
0 |
0 |
12 |
defined $input{'pA'} and defined $input{'pC'} and defined $input{'pG'} and defined $input{'pT'} |
|
255
|
4 |
2 |
1 |
do {
$$self{'probA'}
}->[$i] and do {
$$self{'probA'}
}->[$i] eq 'a' |
|
258
|
4 |
2 |
1 |
do {
$$self{'probC'}
}->[$i] and do {
$$self{'probC'}
}->[$i] eq 'a' |
|
261
|
4 |
3 |
0 |
do {
$$self{'probG'}
}->[$i] and do {
$$self{'probG'}
}->[$i] eq 'a' |
|
264
|
5 |
2 |
0 |
do {
$$self{'probT'}
}->[$i] and do {
$$self{'probT'}
}->[$i] eq 'a' |
|
295
|
6 |
6 |
0 |
not defined $self->{'logA'} and $input{'model'} |
|
347
|
0 |
0 |
0 |
$model{$let} > 0 and $model{$let} < 1 |
|
631
|
99 |
102 |
66 |
$a < $thresh and $c < $thresh |
|
|
201 |
19 |
47 |
$a < $thresh and $c < $thresh and $g < $thresh |
|
|
121 |
24 |
23 |
$a < $thresh and $c < $thresh and $g < $thresh and $t < $thresh |
|
632
|
196 |
45 |
3 |
$a == $t and $a == $c |
|
|
241 |
3 |
0 |
$a == $t and $a == $c and $a == $g |
|
636
|
145 |
1 |
98 |
$a >= $thresh and $a > $t |
|
|
146 |
0 |
98 |
$a >= $thresh and $a > $t and $a > $c |
|
|
1 |
0 |
98 |
$a >= $thresh and $a > $t and $a > $c and $a > $g |
|
637
|
44 |
1 |
101 |
$c >= $thresh and $c > $t |
|
|
45 |
0 |
101 |
$c >= $thresh and $c > $t and $c > $a |
|
|
1 |
0 |
101 |
$c >= $thresh and $c > $t and $c > $a and $c > $g |
|
638
|
26 |
0 |
19 |
$g >= $thresh and $g > $t |
|
|
26 |
0 |
19 |
$g >= $thresh and $g > $t and $g > $c |
|
|
0 |
0 |
19 |
$g >= $thresh and $g > $t and $g > $c and $g > $a |
|
639
|
0 |
0 |
26 |
$t >= $thresh and $t > $g |
|
|
0 |
1 |
25 |
$t >= $thresh and $t > $g and $t > $c |
|
|
1 |
1 |
24 |
$t >= $thresh and $t > $g and $t > $c and $t > $a |
|
712
|
0 |
0 |
1 |
$base eq 'A' and $self->{'logA'} |
|
713
|
0 |
0 |
0 |
$base eq 'C' and $self->{'logC'} |
|
714
|
0 |
0 |
0 |
$base eq 'G' and $self->{'logG'} |
|
715
|
0 |
0 |
0 |
$base eq 'T' and $self->{'logT'} |
|
832
|
0 |
0 |
3 |
$array and $lm |
|
837
|
62 |
0 |
0 |
$c < -$lm and $direct != 1 |
|
838
|
47 |
15 |
0 |
$c < 0 and $direct == 1 |
|
862
|
0 |
0 |
3 |
$str and $lm |