| line |
true |
false |
branch |
|
90
|
0 |
2 |
unless $self->_initialize_io(@args) |
|
94
|
0 |
64 |
if $line =~ // |
|
96
|
2 |
62 |
if ($line =~ /^ALPHABET/) |
|
100
|
32 |
30 |
unless $line =~ /\*{10,}/ or $line eq '' |
|
130
|
4 |
0 |
if ($id2) |
|
189
|
0 |
2 |
if $self->{'end'} |
|
193
|
0 |
182 |
if $line =~ /^Sequence name/ and $line =~ /Strand/ |
|
194
|
2 |
180 |
if ($line =~ /\sSite\s/) |
|
198
|
2 |
180 |
if ($line =~ /width/ and $line =~ /sites/) |
|
207
|
2 |
180 |
if ($line =~ /content/i) |
|
214
|
2 |
180 |
if ($line =~ /position-specific\s+scoring matrix/) |
|
217
|
2 |
180 |
if ($line =~ /^letter-probability\smatrix/) |
|
232
|
0 |
180 |
if ($line =~ /SUMMARY OF MOTIFS/) |
|
236
|
0 |
180 |
if $line =~ /^Time\s/ |
|
238
|
0 |
0 |
if ($endm) |
|
266
|
0 |
50 |
if $line eq '' |
|
297
|
0 |
50 |
if $line eq '' |
|
326
|
2 |
8 |
if $line =~ /\-{5}/ |
|
330
|
0 |
8 |
if ($self->{'_strand'}) { } |
|
337
|
0 |
8 |
if ($seq =~ /[^ACGTacgtNnXx\-\.]/) |