| line |
!l |
l&&!r |
l&&r |
condition |
|
175
|
0 |
0 |
2 |
defined $map->group_type and defined $map->group_abbr |
|
214
|
0 |
973 |
7259 |
defined($line = readline $fh) and not $line =~ /^\s*\n$/ |
|
216
|
3802 |
0 |
973 |
$line =~ /^Bands\s+(\d+)\s+(\d+)/ and not $bandsread |
|
300
|
973 |
0 |
0 |
$self->verbose and $curClone % 1000 == 0 |
|
307
|
0 |
0 |
167 |
defined($line = readline $fh) and not $line =~ /Contigdata/ |
|
319
|
0 |
165 |
490 |
defined($line = readline $fh) and not $line =~ /^\s*\n$/ |
|
370
|
165 |
0 |
0 |
$self->verbose and $curMarker % 1000 == 0 |
|
384
|
0 |
12 |
4 |
$grpabbr and $line =~ /^Chr_remark\s+"(\W|$grpabbr((\d+)|(\w+)|([.\w\d]+)))\s*(\{(.*)\}|\[(.*)\])?"\s+(Pos\s+((\d.)+|NaN))(NOEDIT)?/ |
|
455
|
31 |
0 |
0 |
$self->verbose and $curContig % 100 == 0 |