| line |
true |
false |
branch |
|
112
|
39 |
75 |
if $name |
|
113
|
0 |
114 |
if $id |
|
132
|
82 |
3 |
if (@_) |
|
150
|
0 |
0 |
if (@_) |
|
166
|
0 |
329 |
unless $query_map |
|
167
|
0 |
329 |
unless ref $query_map |
|
168
|
0 |
329 |
unless $query_map->isa('Bio::Map::MapI') |
|
171
|
329 |
164 |
if $map eq $query_map |
|
460
|
0 |
31 |
unless ref $input |
|
461
|
0 |
31 |
unless @extra_args % 2 == 0 |
|
462
|
10 |
21 |
ref $input eq 'ARRAY' ? : |
|
473
|
3 |
28 |
if ($args{'-min_mappables_percent'}) |
|
474
|
2 |
1 |
ref $self ? : |
|
475
|
2 |
1 |
if ($mn > $min_pables_num) |
|
480
|
1 |
30 |
if ($args{'-min_map_percent'}) |
|
482
|
0 |
1 |
ref $self ? : |
|
488
|
1 |
0 |
if ($mn > $min_map_num) |
|
492
|
1 |
30 |
$args{'-required'} ? : |
|
495
|
30 |
1 |
if (ref $self) |
|
497
|
1 |
29 |
if ($args{'-require_self'}) |
|
498
|
0 |
1 |
unless @mine > 0 |
|
505
|
0 |
59 |
if ($compare->isa('Bio::Map::PositionI')) { } |
|
|
59 |
0 |
elsif ($compare->isa('Bio::Map::MappableI')) { } |
|
515
|
0 |
31 |
unless @yours > 0 |
|
519
|
14 |
17 |
if (/equals|overlaps|contains/) |
|
520
|
0 |
14 |
unless @mine > 0 |
|
523
|
8 |
6 |
if ($my_pos->$method($your_pos, undef, $rel)) |
|
531
|
7 |
10 |
if (/less_than|greater_than/) |
|
532
|
0 |
7 |
unless @mine > 0 |
|
533
|
4 |
3 |
if ($method eq 'greater_than') |
|
546
|
4 |
3 |
if ($my_pos->$method($test_pos, $rel)) { } |
|
554
|
4 |
3 |
if ($method eq 'greater_than') |
|
563
|
10 |
0 |
if (/overlapping_groups|intersection|union/) |
|
580
|
10 |
20 |
if $done_ranges{$range_string} |
|
584
|
55 |
55 |
if ($pos->overlaps($range, undef, $rel)) |
|
609
|
1 |
19 |
unless @group >= $min_pos_num |
|
610
|
4 |
15 |
unless @group >= $min_pables_num |
|
611
|
1 |
14 |
unless @group >= $min_map_num |
|
618
|
0 |
14 |
unless keys %mappables >= $min_pables_num |
|
625
|
0 |
14 |
unless keys %maps >= $min_map_num |
|
628
|
2 |
2 |
unless exists $mappables{$required} |
|
638
|
7 |
3 |
if ($method eq 'overlapping_groups') { } |
|
645
|
3 |
0 |
if (@{$group;}) { } |
|
653
|
2 |
1 |
$method eq 'intersection' ? : |
|
661
|
3 |
0 |
if @ok |
|
707
|
0 |
0 |
if (@_) |