Subroutine Coverage

Bio/DB/IndexedBase.pm
Criterion Covered Total %
subroutine 64 75 85.3
pod 20 20 100.0


line count pod subroutine
244 2 n/a BEGIN
247 2 n/a BEGIN
248 2 n/a BEGIN
249 2 n/a BEGIN
250 2 n/a BEGIN
251 2 n/a BEGIN
252 2 n/a BEGIN
253 2 n/a BEGIN
254 2 n/a BEGIN
256 2 n/a BEGIN
259 2 n/a BEGIN
260 2 n/a BEGIN
262 2 n/a BEGIN
263 2 n/a BEGIN
264 2 n/a BEGIN
265 2 n/a BEGIN
268 2 n/a BEGIN
274 2 n/a _strip_crnl
301 0 n/a __ANON__
366 20 Yes new
427 1 Yes newFh
448 38 Yes dbmargs
465 2 Yes glob
482 9 Yes index_dir
504 6 Yes get_all_primary_ids
508 2 n/a BEGIN
525 10 Yes index_file
532 18 n/a _default_index_name
549 1 Yes index_files
570 38 Yes index_name
587 0 Yes path
605 3 Yes get_PrimarySeq_stream
622 22 Yes get_Seq_by_id
629 2 n/a BEGIN
647 0 n/a _calculate_offsets
654 20 n/a _index_files
713 38 n/a _open_index
725 45 n/a _close_index
744 45 n/a _parse_compound_id
776 2997 n/a _guess_alphabet
788 3053 n/a _makeid
795 105 n/a _check_linelength
807 20 n/a _calc_termination_length
828 88 n/a _calc_offset
840 49 n/a _fh
850 48 n/a _fhcache
887 1 Yes offset
905 16 Yes strlen
923 30 Yes length
941 0 Yes linelen
959 0 Yes headerlen
978 0 Yes header_offset
996 13 Yes alphabet
1019 59 Yes file
1027 58 n/a _fileno2path
1033 125 n/a _path2fileno
1044 3052 n/a _packSmall
1049 0 n/a _packBig
1054 209 n/a _unpackSmall
1059 0 n/a _unpackBig
1065 20 n/a _set_pack_method
1087 2 n/a TIEHASH
1092 3 n/a FETCH
1097 0 n/a STORE
1102 0 n/a DELETE
1107 0 n/a CLEAR
1112 1 n/a EXISTS
1117 4 n/a FIRSTKEY
1122 9 n/a NEXTKEY
1127 27 n/a DESTROY
1156 2 n/a BEGIN
1160 4 n/a new
1169 10 n/a next_seq
1178 1 n/a TIEHANDLE
1183 1 n/a READLINE