| line |
true |
false |
branch |
|
102
|
3 |
0 |
if ($entry =~ /^VERSION=(\S+)/) |
|
105
|
3 |
0 |
if (defined($entry = $self->_readline) and $entry =~ /^NAME=(\S+)/) |
|
118
|
0 |
2682 |
if ($entry =~ /^VERSION/) { } |
|
|
18 |
2664 |
elsif ($entry =~ /^SOURCENAME=(\S+)/) { } |
|
|
18 |
2646 |
elsif ($entry =~ /^SOURCEINFO=(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s+(.*)/) { } |
|
|
2637 |
9 |
elsif ($entry =~ /^(\S):(\S+)/) { } |
|
126
|
0 |
18 |
if ($name =~ m[(\S+)/(\d+)-(\d+)]) { } |
|
161
|
2637 |
0 |
if ($list =~ /^([L\d]*)([S\d]*)([A\d]*)/) |
|
166
|
2625 |
12 |
if @{$node->{'L'};} > 0 |
|
167
|
2637 |
0 |
if @{$node->{'S'};} > 0 |
|
168
|
2313 |
324 |
if @{$node->{'A'};} > 0 |
|
177
|
1371 |
1266 |
if $node->{'status'} ne 'unvisited' |
|
190
|
942 |
1371 |
if $node->{'status'} ne 'unvisited' |
|
214
|
3 |
0 |
if $aln->num_sequences |
|
243
|
0 |
2 |
unless ($aln and $aln->isa('Bio::Align::AlignI')) |
|
275
|
2200 |
2864 |
if $char eq $aln->gap_char |
|
277
|
1758 |
1106 |
unless (defined($node = $ring->{'nodes'}{$char})) |
|
298
|
12 |
2852 |
unless defined $seq->{'first'} |
|
304
|
2852 |
12 |
if defined $seq->{'previous'} |
|
309
|
628 |
216 |
if ($ring->{'first'} < $ring->{'last'}) |
|
323
|
2 |
0 |
$aln->source && !($aln->source =~ /\A\s*\Z/) ? : |
|
342
|
1750 |
8 |
if keys %{$$node{'L'};} > 0 |
|
343
|
1758 |
0 |
if @{$node->{'S'};} > 0 |
|
344
|
1542 |
216 |
if @{$node->{'A'};} > 0 |
|
348
|
2 |
0 |
if $self->_flush_on_write and defined $self->_fh |