| Bio/AlignIO/phylip.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 15 | 33 | 45.4 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 179 | 14 | 0 | 0 | defined $linelen and $linelen > 0 |
| 225 | 0 | 0 | 10 | $seqcount and $residuecount |
| 358 | 0 | 0 | 4 | $aln and $aln->isa('Bio::Align::AlignI') |
| 437 | 22 | 36 | 286 | $tempcount + $tag_length < $length and $index < $numtags |
| 478 | 0 | 0 | 4 | $self->_flush_on_write and defined $self->_fh |
| line | l | !l | condition |
|---|---|---|---|
| 603 | 0 | 0 | $self->{'_id_linebreak'} || 0 |
| 622 | 0 | 14 | $self->{'_wrap_sequential'} || 0 |
| 641 | 14 | 86 | $self->{'_longid'} || 0 |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 177 | 0 | 14 | 0 | $idlength || $Bio::AlignIO::phylip::DEFAULTIDLENGTH |
| 181 | 0 | 14 | 0 | $tag_length or $Bio::AlignIO::phylip::DEFAULTTAGLEN |
| 563 | 0 | 0 | 8 | $self->{'_line_length'} || $Bio::AlignIO::phylip::DEFAULTLINELEN |
| 584 | 0 | 15 | 3 | $self->{'_tag_length'} || $Bio::AlignIO::phylip::DEFAULTTAGLEN |