| line |
true |
false |
branch |
|
93
|
0 |
5 |
if $width |
|
117
|
0 |
6 |
if ($entry =~ /\A\s*\Z/s) |
|
118
|
0 |
0 |
unless $entry = $self->_readline |
|
124
|
6 |
0 |
if defined $sequence |
|
130
|
6 |
0 |
if ($top =~ m[(\S+)/(\d+)-(\d+)]) { } |
|
|
0 |
0 |
elsif ($top =~ /(\S+)/) { } |
|
141
|
6 |
0 |
if defined $sequence |
|
161
|
0 |
9 |
if ($seq->length < $alnlen) |
|
167
|
3 |
0 |
if $aln->num_sequences |
|
186
|
0 |
2 |
unless ($aln and $aln->isa('Bio::Align::AlignI')) |
|
194
|
8 |
0 |
if (length $str > 0) { } |
|
199
|
0 |
8 |
unless $self->_print('>', $name, "\n", $str) |
|
200
|
2 |
6 |
if ($seq->isa('Bio::Seq::MetaI')) |
|
209
|
2 |
0 |
if $self->_flush_on_write and defined $self->_fh |
|
227
|
0 |
2 |
if (defined $value) |