| line |
true |
false |
branch |
|
125
|
0 |
2 |
unless $entry =~ /^#mega/i |
|
130
|
2 |
22 |
if (/\!Title:\s*([^\;]+)\s*/i) { } |
|
|
2 |
20 |
elsif (s/\!Format\s+([^\;]+)\s*/$1/) { } |
|
|
2 |
18 |
elsif (/^\#/) { } |
|
135
|
2 |
4 |
if ($name eq 'datatype') { } |
|
|
2 |
2 |
elsif ($name eq 'identical') { } |
|
|
2 |
0 |
elsif ($name eq 'indel') { } |
|
149
|
36 |
6 |
unless ($entry =~ /^\s+$/) |
|
155
|
12 |
24 |
unless (defined $seqs{$seqname}) |
|
174
|
2 |
0 |
if $aln->num_sequences |
|
195
|
0 |
1 |
if (not $aln && $aln->isa('Bio::Align::AlignI')) { } |
|
|
0 |
1 |
elsif (not $aln->is_flush($self->verbose)) { } |
|
232
|
1 |
0 |
if $self->_flush_on_write and defined $self->_fh |