| line |
true |
false |
branch |
|
92
|
86 |
454 |
if ($entry =~ s/^>\s*(\S+)\s*//) |
|
96
|
76 |
10 |
if (defined $name) |
|
126
|
0 |
10 |
unless defined $name |
|
127
|
0 |
10 |
unless defined $seqchar |
|
131
|
5 |
5 |
if ($name =~ m[(\S+/(\d+)-(\d+))$]) { } |
|
144
|
10 |
0 |
unless (length $seqchar == 0 and length $seqname == 0) |
|
158
|
39 |
47 |
if ($seq->length < $alnlen) |
|
165
|
10 |
0 |
if $aln->num_sequences |
|
188
|
0 |
2 |
unless ($aln and $aln->isa('Bio::Align::AlignI')) |
|
192
|
0 |
2 |
if ($self->force_displayname_flat) |
|
199
|
3 |
14 |
if $desc |
|
200
|
0 |
17 |
unless $self->_print(">$name$desc\n") |
|
203
|
17 |
0 |
if (defined $seq and $length > 0) { } |
|
211
|
2 |
0 |
if $self->_flush_on_write and defined $self->_fh |
|
247
|
10 |
2 |
if @_ |