| Bio/Align/Utilities.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 9 | 25 | 36.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 137 | 0 | 0 | 2 | defined $aln and ref $aln |
| 0 | 0 | 2 | defined $aln and ref $aln and $aln->isa('Bio::Align::AlignI') | |
| 200 | 0 | 0 | 1 | defined $dna_aln and ref $dna_aln |
| 0 | 0 | 1 | defined $dna_aln and ref $dna_aln and $dna_aln->isa('Bio::Align::AlignI') |
| line | l | !l | condition |
|---|---|---|---|
| 260 | 3 | 0 | $count ||= 1 |
| 312 | 0 | 0 | $count ||= 1 |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 152 | 17 | 0 | 0 | $dnaseqs->{$pepid} || $aln->throw('cannot find ' . $seq->display_id) |
| 156 | 17 | 0 | 0 | $dnaseqs->{$pepid}->display_id || $pepid |
| 161 | 765 | 0 | 4787 | $char eq $GAP or $j >= $dnalen |