| line |
true |
false |
branch |
|
273
|
0 |
1 |
unless defined $run_option |
|
283
|
1 |
0 |
if (-e $schema_file) { } |
|
289
|
0 |
0 |
if -e $p |
|
291
|
0 |
0 |
unless -e $self->_schema_file |
|
306
|
0 |
1 |
if defined $query |
|
307
|
0 |
1 |
if defined $ids |
|
311
|
0 |
1 |
if $self->query |
|
333
|
10 |
1 |
if @_ |
|
334
|
1 |
0 |
if (not $self->{'_RUN_LEVEL'} or $self->{'_RUN_LEVEL'} < 1) |
|
353
|
9 |
1 |
if (@_) |
|
355
|
0 |
9 |
unless ref $a eq 'ARRAY' |
|
358
|
0 |
9 |
if (@$a) { } |
|
366
|
10 |
0 |
if $self->{'ids'} |
|
382
|
8 |
10 |
if @_ |
|
407
|
1 |
0 |
if ($fname) { } |
|
408
|
0 |
1 |
unless open $fh, '>', $fname |
|
442
|
756 |
5104 |
$a =~ /^[0-9]+$/ && $b =~ /^[0-9]+$/ ? : |
|
443
|
31 |
43 |
if (grep /Any/, @tmp) |
|
448
|
32 |
42 |
@tmp ? : |
|
|
68 |
6 |
@als ? : |
|
501
|
1 |
0 |
if (not $self->{'_RUN_LEVEL'} or $self->{'_RUN_LEVEL'} < 2) |
|
505
|
0 |
0 |
if exists $self->{'_annotations'} |
|
507
|
0 |
0 |
wantarray ? : |
|
|
0 |
0 |
if @ret |
|
533
|
0 |
0 |
unless defined $id |
|
534
|
0 |
0 |
unless defined $ac |
|
535
|
0 |
0 |
unless ref $ac eq 'Bio::Annotation::Collection' |
|
539
|
0 |
0 |
unless exists $self->{'_annotations'}{$id} |
|
655
|
0 |
0 |
if (not $self->{'_RUN_LEVEL'} or $self->{'_RUN_LEVEL'} < 2) |
|
683
|
0 |
0 |
if (not $self->{'_RUN_LEVEL'} or $self->{'_RUN_LEVEL'} < 2) |
|
691
|
0 |
0 |
wantarray ? : |
|
722
|
4 |
5 |
unless defined $rl |
|
723
|
0 |
9 |
unless grep /^$Bio::DB::Query::HIVQuery::RUN_OPTION$/, (0, 1, 2) |
|
726
|
9 |
0 |
unless (defined $self->{'_RUN_LEVEL'}) |
|
730
|
0 |
0 |
if ($rl > 0 and !defined($self->{'_RUN_LEVEL'}) || $self->{'_RUN_LEVEL'} <= 0) |
|
734
|
0 |
0 |
if ($rl > 1 and !defined($self->{'_RUN_LEVEL'}) || $self->{'_RUN_LEVEL'} <= 1) |
|
778
|
0 |
0 |
if @_ |
|
795
|
0 |
0 |
if @_ |
|
813
|
1 |
1 |
if @_ |
|
830
|
1 |
0 |
if (@_) |
|
832
|
1 |
0 |
if ($_ eq 'HASH') |
|
836
|
0 |
0 |
unless ($_) |
|
868
|
0 |
0 |
unless defined $id |
|
876
|
1 |
3 |
if @_ |
|
893
|
1 |
1 |
if @_ |
|
910
|
1 |
1 |
if @_ |
|
927
|
1 |
1 |
if @_ |
|
994
|
1 |
2 |
if @_ |
|
1014
|
9 |
1 |
$self->{'_schema'} ? : |
|
1035
|
0 |
5 |
unless $a |
|
1036
|
5 |
0 |
if (ref $a eq 'ARRAY') { } |
|
1061
|
0 |
0 |
if (@_) |
|
1063
|
0 |
0 |
unless ref $r eq 'HTTP::Response' |
|
1089
|
0 |
9 |
unless (defined $_) |
|
1095
|
2 |
7 |
if (ref $_ eq 'HASH') |
|
1097
|
1 |
1 |
if (grep /HASH/, map({ref $_;} values %inhash)) |
|
1101
|
0 |
1 |
unless defined $inhash{'query'} |
|
1106
|
3 |
4 |
if (ref $_ eq 'ARRAY') |
|
1129
|
0 |
17 |
if (grep /^$k$/, @validFields) { } |
|
|
15 |
2 |
elsif (grep /^$k$/, @validAliases) { } |
|
1134
|
15 |
1003 |
if (grep /^$k$/, $schema->aliases($_)) |
|
1148
|
6 |
9 |
ref $qh->{'query'}{$k} eq 'ARRAY' ? : |
|
1149
|
0 |
15 |
if ($vf->{'type'} eq 'text') { } |
|
|
15 |
0 |
elsif ($vf->{'type'} eq 'option') { } |
|
1154
|
0 |
0 |
if $_ eq '' and $vf->{'blank_ok'} eq 'false' |
|
1162
|
3086 |
0 |
if defined $_ |
|
|
1 |
20 |
unless $vf->{'option'} and grep {/^$md$/ if defined $_;} @{$$vf{'option'};} |
|
1170
|
2 |
3 |
if ($qh->{'annot'}) |
|
1177
|
0 |
2 |
if (grep /^$k$/, @validFields) { } |
|
|
2 |
0 |
elsif (grep /^$k$/, @validAliases) { } |
|
1182
|
2 |
128 |
if (grep /^$k$/, $schema->aliases($_)) |
|
1201
|
5 |
0 |
unless grep /SequenceEntry\.SE_id/, @query |
|
1202
|
5 |
0 |
unless grep /SequenceAccessions\.SA_GenBankAccession/, @query |
|
1208
|
5 |
0 |
unless grep /order/, @query |
|
1219
|
5 |
0 |
if (@qtbl > 1) |
|
1236
|
5 |
10 |
unless $_ |
|
1245
|
10 |
5 |
unless (grep /^$fld$/, keys %q) |
|
1282
|
0 |
0 |
if (not $self->_lanl_query) { } |
|
1326
|
0 |
0 |
$query[$_] =~ s/^COMMAND\.// ? : |
|
1327
|
0 |
0 |
$query[$_] =~ /^COMMAND/ ? : |
|
1332
|
0 |
0 |
unless (grep /^$cp$/, @query) |
|
1350
|
0 |
0 |
unless ($idPing->is_success) |
|
1355
|
0 |
0 |
unless ($self->_session_id) |
|
1357
|
0 |
0 |
unless ($self->_session_id) |
|
1370
|
0 |
0 |
unless ($interfGet->is_success) |
|
1376
|
0 |
0 |
unless ($interfGet->content =~ /$search_form_re/) |
|
1382
|
0 |
0 |
unless ($searchGet->is_success) |
|
1388
|
0 |
0 |
if (/$no_seqs_found_re/) |
|
1393
|
0 |
0 |
if (/$too_many_re/) |
|
1398
|
0 |
0 |
if (/$tbl_no_join_re/) |
|
1402
|
0 |
0 |
if (/$sys_error_re/) |
|
1407
|
0 |
0 |
if (/$seqs_found_re/) |
|
1418
|
0 |
0 |
unless $response->is_success |
|
1424
|
0 |
0 |
if ($@) |
|
1425
|
0 |
0 |
unless ($@ =~ /No sequences found/) |
|
1433
|
0 |
0 |
unless $count |
|
1463
|
0 |
0 |
unless $self->_lanl_response |
|
1490
|
0 |
0 |
if $_ eq '#' |