| line |
true |
false |
branch |
|
129
|
0 |
0 |
if scalar @ids > 0 |
|
130
|
0 |
0 |
if $id |
|
154
|
70 |
0 |
if (defined $value) { } |
|
155
|
0 |
70 |
if (not $value->isa('Bio::Variation::Allele')) { } |
|
160
|
19 |
51 |
if ($self->isa('Bio::Variation::AAChange')) { } |
|
161
|
18 |
1 |
if $value->seq |
|
163
|
47 |
4 |
if $value->seq |
|
213
|
66 |
88 |
if (defined $value) |
|
214
|
66 |
0 |
if ($value) { } |
|
247
|
73 |
975 |
if (defined $value) |
|
248
|
0 |
73 |
if (not ref $value && $value->isa('Bio::Variation::Allele')) { } |
|
251
|
19 |
54 |
if ($self->isa('Bio::Variation::AAChange')) { } |
|
252
|
19 |
0 |
if $value->seq |
|
254
|
50 |
4 |
if $value->seq |
|
287
|
236 |
1049 |
if (defined $value) |
|
288
|
0 |
236 |
if (not ref $value && $value->isa('Bio::Variation::Allele')) { } |
|
291
|
69 |
167 |
if ($self->isa('Bio::Variation::AAChange')) { } |
|
292
|
65 |
4 |
if $value->seq |
|
294
|
151 |
16 |
if $value->seq |
|
327
|
74 |
131 |
if (defined $value) |
|
330
|
12 |
193 |
unless (exists $self->{'length'}) |
|
355
|
49 |
313 |
if (defined $value) |
|
381
|
49 |
334 |
if (defined $value) |
|
438
|
3 |
3 |
if (defined $value) |
|
440
|
3 |
0 |
if ($status{$value}) { } |
|
447
|
0 |
6 |
unless (exists $self->{'status'}) |
|
477
|
63 |
104 |
if (defined $value) |
|
479
|
63 |
0 |
if ($proof{$value}) { } |
|
508
|
10 |
38 |
if (defined $value) |
|
534
|
8 |
48 |
if (defined $value) |
|
559
|
11 |
55 |
if (defined $value) |
|
560
|
0 |
11 |
if (not $value =~ /^[+-]?\d+$/) { } |
|
593
|
3 |
3 |
if (defined $value) |
|
595
|
3 |
0 |
if ($numbering{$value}) { } |
|
602
|
0 |
6 |
unless (exists $self->{'numbering'}) |
|
630
|
72 |
216 |
if (defined $value) |
|
633
|
0 |
288 |
if (not exists $self->{'mut_number'}) { } |
|
663
|
77 |
131 |
if (defined $value) |
|
664
|
0 |
77 |
if (not $value->isa('Bio::Variation::SeqDiff')) { } |
|
672
|
7 |
201 |
if (not exists $self->{'seqDiff'}) { } |
|
694
|
0 |
0 |
if ($com and not $com->isa('Bio::Annotation::DBLink')) |
|
697
|
0 |
0 |
if $com |
|
738
|
37 |
68 |
unless ($self->{'re_changes'}) |
|
742
|
0 |
37 |
if ($self->isa('Bio::Variation::AAChange')) |
|
747
|
0 |
37 |
if $self->upStreamSeq eq '' |
|
749
|
0 |
37 |
if $self->dnStreamSeq eq '' |
|
758
|
16 |
21 |
if ($self->isa('Bio::Variation::RNAChange') and $self->DNAMutation and $self->upStreamSeq eq $self->DNAMutation->upStreamSeq and $self->dnStreamSeq eq $self->DNAMutation->dnStreamSeq and $self->DNAMutation->restriction_changes ne '') { } |
|
770
|
0 |
21 |
if $le_dn > CORE::length $self->dnStreamSeq |
|
771
|
0 |
21 |
if $le_up > CORE::length $self->upStreamSeq |
|
776
|
19 |
2 |
if $self->allele_ori->seq |
|
777
|
19 |
2 |
if $self->allele_mut->seq |
|
794
|
45 |
4701 |
if scalar @ori < scalar @mut or scalar @ori_r < scalar @mut_r |
|
796
|
41 |
4705 |
if scalar @ori > scalar @mut or scalar @ori_r > scalar @mut_r |
|
800
|
18 |
3 |
if $rec ne '' |