| line |
true |
false |
branch |
|
164
|
1 |
81 |
if (/^Relative Substitution Rate Matrix/) { } |
|
|
2 |
79 |
elsif (/^Transition Probability Matrix/) { } |
|
|
1 |
78 |
elsif (/Acid Frequencies/) { } |
|
|
2 |
76 |
elsif (m[^(\d+)\s*/\s*(\d+)\s+(.+)\s+model]) { } |
|
|
65 |
11 |
elsif ($state == 1) { } |
|
|
10 |
1 |
elsif ($state == 2) { } |
|
165
|
0 |
1 |
if (%subst_matrix) |
|
173
|
1 |
20 |
if /^\s+$/ |
|
180
|
20 |
380 |
if ($l =~ /\D+/) |
|
191
|
20 |
380 |
if ($i == $j) { } |
|
202
|
2 |
0 |
if (/(1\.0e(5|7))\)\s+(\S+)/) |
|
206
|
1 |
1 |
if (defined $trans_type) |
|
226
|
1 |
20 |
unless (/^\s+/) |
|
247
|
0 |
2 |
if (defined $treenum) |
|
256
|
4 |
61 |
if /^\s+$/ or /^\s+Ala/ |
|
259
|
40 |
21 |
if ($trans_type eq '1PAM-1.0e7') { } |
|
|
21 |
0 |
elsif ($trans_type eq '1PAM-1.0e5') { } |
|
262
|
2 |
38 |
if $transition_ct % 20 == 0 |
|
266
|
1 |
20 |
if $transition_ct >= 20 |
|
270
|
5 |
5 |
if (s/^(\d+)\s+(\-?\d+(\.\d+)?)\s+//) |
|
280
|
2 |
0 |
if (@treelines) |
|
285
|
5 |
5 |
if (@treedata) |
|
294
|
0 |
2 |
unless $parsed |