| line |
true |
false |
branch |
|
318
|
0 |
0 |
if ($qual[$current] != 0) |
|
325
|
0 |
0 |
if ($start_base > $sequence_length - 100) |
|
372
|
0 |
0 |
unless ($points[0] or $points[1]) |
|
376
|
0 |
0 |
if ($class eq 'singlet' and $name =~ /$fdesig$/) { } |
|
|
0 |
0 |
elsif ($class eq 'singlet' and $name =~ /$rdesig$/) { } |
|
|
0 |
0 |
elsif ($class eq 'singleton' and $name =~ /$fdesig$/) { } |
|
|
0 |
0 |
elsif ($class eq 'singleton' and $name =~ /$rdesig$/) { } |
|
|
0 |
0 |
elsif ($class eq 'doublet') { } |
|
396
|
0 |
0 |
if ($subs_Xs) |
|
403
|
0 |
0 |
if ($subs_Ns) |
|
433
|
0 |
0 |
if $self->verbose > 0 |
|
437
|
0 |
0 |
if ($offset) { } |
|
443
|
0 |
0 |
if (not $quals[$count2]) { } |
|
454
|
0 |
0 |
if ($qualsum and $qualsum >= $windowsize * $phreds) |
|
483
|
0 |
0 |
unless ($count) |
|
490
|
0 |
0 |
if ($count2 == $total_bases - 1) { } |
|
|
0 |
0 |
elsif ($bases_counted == $windowsize) { } |
|
497
|
0 |
0 |
if ($qualsum < $bases_counted * $phreds) |
|
506
|
0 |
0 |
if ($qualsum < $bases_counted * $phreds) { } |
|
512
|
0 |
0 |
if ($end_of_quals) { } |
|
517
|
0 |
0 |
if ($qualsum) |
|
540
|
0 |
0 |
if ($qualities[$current] and $qualities[$current] != 0) |
|
575
|
0 |
0 |
if ($count2 == $size_of_quality) { } |
|
|
0 |
0 |
elsif ($bases_counted == $windowsize) { } |
|
585
|
0 |
0 |
unless (not $quals[$count2]) |
|
589
|
0 |
0 |
unless (not $qualsum && $windowsize) |
|
591
|
0 |
0 |
unless ($average) |
|
617
|
0 |
0 |
if ($count % 10 == 0) |
|
618
|
0 |
0 |
if ($qual[$count]) { } |
|
641
|
0 |
0 |
unless ($count) |
|
644
|
0 |
0 |
if ($count2 == scalar(@quals) - 1) |
|
652
|
0 |
0 |
if ($qualsum < $windowsize * $phreds) |