Condition Coverage

Bio/Tools/Alignment/Consed.pm
Criterion Covered Total %
condition 20 46 43.4


and 3 conditions

line !l l&&!r l&&r condition
481 0 0 0 $self->{'contigs'}{$currkey}{'name'} and $self->{'contigs'}{$currkey}{'name'} eq "$name"
581 53 0 857 $self->{'contigs'}{$contig_number}{'quality'} and not $self->{'contigs'}{$contig_number}{'quality'} =~ /\ $/
1008 1 0 64 $name and $sequence
1027 0 0 1 $name and $sequence
1378 150 204 0 $num_array_elem == 1 and $self->{'contigs'}{$key}{'class'}
0 195 9 $num_array_elem == 1 and $self->{'contigs'}{$key}{'class'} and $self->{'contigs'}{$key}{'class'} eq 'singleton'
1402 216 135 3 @{$self->{'contigs'}{$key}{'member_array'};} == 2 and $self->{'contigs'}{$key}{'class'} eq 'pair'
1503 15 204 135 $self->{'contigs'}{$_}{'name'} and $self->{'contigs'}{$_}{'class'} eq 'doublet'

or 2 conditions

line l !l condition
1447 92 0 $self->{'forward_designator'} || 'f'
1448 92 0 $self->{'reverse_designator'} || 'r'

or 3 conditions

line l !l&&r !l&&!r condition
1094 0 0 0 $self->{'contigs'} eq "$name" or $self->{'contigs'}{'name'} eq "$name"
1449 92 0 0 /(.+)($forward_designator.*)/ || /(.+)($reverse_designator.*)/ || /(.+)(_.+)/
1460 45 47 0 $suffix =~ /^$forward_designator/ or $suffix =~ /^$reverse_designator/
1717 0 0 0 s/c/g/ or s/g/c/
0 0 0 s/c/g/ or s/g/c/ or s/a/t/
1767 0 0 0 not $bottom_quality_here or 1 - $self->{'contigs'}{$current_contig}{'bottom_start'} + $count < 0