| line |
!l |
l&&!r |
l&&r |
condition |
|
548
|
1 |
0 |
3 |
$seq->isa('Bio::AnnotatableI') and $catseq->isa('Bio::AnnotatableI') |
|
561
|
1 |
0 |
3 |
$seq->isa('Bio::SeqI') and $catseq->isa('Bio::SeqI') |
|
650
|
0 |
0 |
6 |
&blessed($seq) and $seq->isa('Bio::PrimarySeqI') |
|
665
|
0 |
6 |
0 |
$left_seq and $right_seq |
|
685
|
0 |
0 |
4 |
$product->isa('Bio::SeqI') and $seq->isa('Bio::SeqI') |
|
739
|
0 |
0 |
3 |
&blessed($recipient) and $recipient->isa('Bio::PrimarySeqI') |
|
744
|
0 |
0 |
3 |
&blessed($fragment) and $fragment->isa('Bio::PrimarySeqI') |
|
763
|
0 |
3 |
0 |
$fragment->can('is_circular') and $fragment->is_circular |
|
814
|
0 |
0 |
3 |
$product->isa('Bio::AnnotatableI') and $fragment->isa('Bio::AnnotatableI') |
|
916
|
0 |
0 |
3 |
&blessed($fragment) and $fragment->isa('Bio::PrimarySeqI') |
|
976
|
0 |
0 |
38 |
defined $left and defined $right |
|
980
|
0 |
0 |
0 |
$feat->can('is_circular') and $feat->is_circular |
|
1017
|
9 |
12 |
4 |
$start < $deletion->start and $end > $deletion->end |
|
|
9 |
4 |
8 |
$_->start < $deletion->start and $_->end >= $deletion->start |
|
|
4 |
4 |
5 |
$_->start <= $deletion->end and $_->end > $deletion->end |
|
1153
|
20 |
0 |
2 |
$_->location_type eq 'IN-BETWEEN' and $_->start == $insert_pos |
|
1161
|
8 |
9 |
3 |
$start <= $insert_pos and $end > $insert_pos |
|
1327
|
3 |
0 |
0 |
&blessed(scalar $out_seq_obj->seq) and $out_seq_obj->seq->isa('Bio::PrimarySeq') |
|
1353
|
0 |
6 |
0 |
$attr and ref $attr ne 'HASH' |
|
1378
|
0 |
0 |
4 |
$out_seq_obj->isa('Bio::AnnotatableI') and $in_seq_obj->isa('Bio::AnnotatableI') |
|
1427
|
10 |
3 |
1 |
defined $length and $add + $_ > $length |
|
1573
|
11 |
0 |
1 |
$type eq 'BEFORE' and substr($coord, 0, 1) ne '>' |
|
1575
|
12 |
0 |
0 |
$type eq 'AFTER' and substr($coord, 0, 1) ne '<' |
|
1616
|
0 |
0 |
1 |
$sim =~ /^[+\d.]+$/ and $sim <= 100 |