| line |
!l |
l&&!r |
l&&r |
condition |
|
265
|
5 |
31 |
1 |
defined($_ = $self->_readline) and /^\s+$/ |
|
266
|
5 |
0 |
31 |
defined $_ and /^ID\s/ |
|
368
|
0 |
30 |
474 |
defined($_ = $self->_readline) and /^CC\s{3}(.*)/ |
|
447
|
0 |
31 |
443 |
defined $_ and /^FT/ |
|
462
|
0 |
31 |
0 |
defined $_ and not /^SQ/ |
|
503
|
0 |
4 |
0 |
ref $seq and $seq->isa('Bio::SeqI') |
|
511
|
0 |
1 |
3 |
$seq->can('namespace') && $seq->namespace |
|
514
|
1 |
3 |
0 |
$seq->can('division') and defined($div = $seq->division) |
|
519
|
0 |
1 |
3 |
defined $ns and $ns ne '' |
|
633
|
0 |
1 |
3 |
$seq->can('species') and my $spec = $seq->species |
|
716
|
15 |
0 |
12 |
defined $dblink->comment and $dblink->comment |
|
745
|
0 |
0 |
3 |
$kw and not $kw =~ /\.$/ |
|
804
|
140 |
0 |
24 |
($i + 10) % 60 == 0 and $i + 10 < length $str |
|
810
|
0 |
0 |
4 |
$self->_flush_on_write and defined $self->_fh |
|
951
|
0 |
9 |
0 |
ref $fth and $fth->isa('Bio::SeqIO::FTHelper') |
|
1135
|
93 |
30 |
30 |
/^OS\s+(\S.+)/ and not defined $sci_name |
|
|
30 |
2 |
29 |
/^OX\s+(.*)/ and not defined $ncbi_taxid |
|
1161
|
0 |
13 |
0 |
not defined $variant and $item =~ /(^|[^\(\w])([Ss]train|isolate|serogroup|serotype|subtype|clone)\b/ || $item =~ /^(biovar|pv\.|type\s+)/ |
|
1174
|
13 |
0 |
0 |
index($common, '(') >= 0 and index($common, ')') < 0 |
|
1228
|
0 |
30 |
0 |
$species and $species =~ /subsp\.|var\./ |
|
1296
|
59 |
0 |
384 |
$4 and length $4 > 0 |
|
1304
|
0 |
443 |
312 |
defined($_ = $self->_readline) and /^FT\s{20,}(\S.*)$/ |
|
1329
|
59 |
0 |
384 |
$desc and length $desc |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
288
|
5 |
21 |
5 |
$seq_div eq 'Reviewed' || $seq_div eq 'STANDARD' |
|
|
2 |
2 |
1 |
$seq_div eq 'Unreviewed' || $seq_div eq 'PRELIMINARY' |
|
327
|
19 |
11 |
60 |
$version =~ /\(Rel\. (\d+), Last sequence update\)/ or /sequence version (\d+)/ |
|
|
19 |
11 |
30 |
$version =~ /\(Rel\. (\d+), Last annotation update\)/ or /entry version (\d+)/ |
|
672
|
0 |
0 |
3 |
$ref->medline or $ref->pubmed |
|
|
0 |
0 |
3 |
$ref->medline or $ref->pubmed or $ref->doi |
|
1039
|
30 |
227 |
1556 |
/^[^R]/ or /^RN/ |
|
1161
|
0 |
0 |
13 |
$item =~ /(^|[^\(\w])([Ss]train|isolate|serogroup|serotype|subtype|clone)\b/ || $item =~ /^(biovar|pv\.|type\s+)/ |
|
1405
|
3 |
6 |
45 |
$pre1 eq 'RA ' or $pre1 eq 'KW ' |