| line |
true |
false |
branch |
|
88
|
9 |
0 |
if (not defined $self->sequence_factory) |
|
112
|
9 |
6 |
unless (/\.\.$/) |
|
114
|
6 |
9 |
if (/\.\.$/) |
|
115
|
6 |
0 |
if (/Check\:\s(\d+)\s/) |
|
116
|
6 |
0 |
if (/Type:\s(\w)\s/) |
|
117
|
6 |
0 |
if (/(\S+)\s+Length/) |
|
119
|
6 |
0 |
if (/Length:\s+(\d+)\s+(\S.+\S)\s+Type/) |
|
124
|
2 |
6 |
unless defined $_ |
|
131
|
0 |
86 |
if (/\.\.$/) |
|
135
|
43 |
43 |
if $_ eq "\n" |
|
142
|
6 |
0 |
if (defined $chksum) |
|
143
|
0 |
6 |
unless (_validate_checksum(uc $sequence, $chksum)) |
|
150
|
6 |
0 |
if (defined $id) |
|
154
|
6 |
0 |
if (defined $type) |
|
155
|
0 |
6 |
if ($type eq 'N') |
|
156
|
6 |
0 |
if ($type eq 'P') |
|
181
|
0 |
3 |
unless defined $seq and ref $seq and $seq->isa('Bio::PrimarySeqI') |
|
184
|
0 |
3 |
if $seq->display_id =~ /\s/ |
|
190
|
0 |
3 |
$seq->alphabet =~ /[dr]na/i ? : |
|
193
|
3 |
0 |
if ($seq->can('get_dates')) { } |
|
213
|
24 |
84 |
if ($j % 50 == 0) |
|
218
|
84 |
24 |
if ($j < $len and $j % 50 != 0) { } |
|
|
21 |
3 |
elsif ($j % 50 == 0) { } |
|
225
|
3 |
0 |
if ($j % 50 != 0) |
|
229
|
0 |
3 |
unless $self->_print(@out) |
|
232
|
3 |
0 |
if $self->_flush_on_write and defined $self->_fh |
|
261
|
105 |
6175 |
if ($index == 57) |
|
295
|
32 |
1904 |
if $cnt == 57 |
|
301
|
6 |
0 |
if ($parsed_sum == $computed_sum) { } |