| line |
!l |
l&&!r |
l&&r |
condition |
|
225
|
3 |
7 |
0 |
defined $topology and $topology eq 'circular' |
|
262
|
5 |
0 |
19 |
defined $name and length $name |
|
398
|
0 |
2 |
22 |
defined $buffer and $buffer =~ /^FT / |
|
410
|
6 |
232 |
18 |
$params{'-species'} and $feat->primary_tag eq 'source' |
|
|
238 |
6 |
12 |
$params{'-species'} and $feat->primary_tag eq 'source' and $feat->has_tag('db_xref') |
|
|
238 |
0 |
12 |
$params{'-species'} and $feat->primary_tag eq 'source' and $feat->has_tag('db_xref') and not $params{'-species'}->ncbi_taxid |
|
430
|
3 |
18 |
3 |
$params{'-species'} and defined $ncbi_taxid |
|
|
21 |
1 |
2 |
$params{'-species'} and defined $ncbi_taxid and not $params{'-species'}->ncbi_taxid |
|
436
|
0 |
24 |
20 |
defined $buffer and $buffer =~ /^XX/ |
|
445
|
1 |
3 |
0 |
$buffer and $buffer =~ /^CO/ |
|
522
|
7 |
2 |
2 |
$seq->can('division') and defined $seq->division |
|
|
9 |
0 |
2 |
$seq->can('division') and defined $seq->division and $self->_is_valid_division($seq->division) |
|
531
|
7 |
2 |
2 |
$seq->can('molecule') and defined $seq->molecule |
|
|
9 |
2 |
0 |
$seq->can('molecule') and defined $seq->molecule and $self->_is_valid_molecule_type($seq->molecule) |
|
|
2 |
3 |
6 |
$seq->can('primary_seq') and defined $seq->primary_seq->alphabet |
|
642
|
2 |
2 |
9 |
ref $seq and $seq->isa('Bio::SeqI') |
|
645
|
2 |
0 |
2 |
ref $seq and $seq->isa('Bio::PrimarySeqI') |
|
658
|
7 |
0 |
4 |
$seq->isa('Bio::Seq::RichSeqI') and defined $seq->accession_number |
|
684
|
4 |
0 |
0 |
$cr and $ur |
|
|
4 |
0 |
0 |
$cr and $ur and $ur |
|
728
|
2 |
3 |
6 |
$seq->can('species') and my $spec = $seq->species |
|
752
|
2 |
0 |
9 |
$seq->can('annotation') and defined $seq->annotation |
|
763
|
0 |
0 |
6 |
$start and $end |
|
863
|
2 |
0 |
9 |
$seq->can('annotation') and defined $seq->annotation |
|
919
|
0 |
0 |
11 |
$self->_flush_on_write and defined $self->_fh |
|
938
|
0 |
38 |
0 |
ref $fth and $fth->isa('Bio::SeqIO::FTHelper') |
|
1368
|
0 |
0 |
0 |
defined($data = $qual[++$i]) and not $data =~ m[^/] |