Bio/SeqFeature/Lite.pm | |||
---|---|---|---|
Criterion | Covered | Total | % |
condition | 9 | 94 | 9.5 |
line | !l | l&&!r | l&&r | condition |
---|---|---|---|---|
223 | 0 | 0 | 3 | defined $self->{'stop'} and defined $self->{'start'} |
0 | 3 | 0 | defined $self->{'stop'} and defined $self->{'start'} and $self->{'stop'} < $self->{'start'} | |
257 | 0 | 0 | 0 | defined $start and defined $stop |
283 | 0 | 0 | 0 | $seg->start and $seg->start < $min_start |
284 | 0 | 0 | 0 | $seg->end and $seg->end > $max_stop |
627 | 0 | 0 | 0 | defined $strand && $strand < 0 |
707 | 0 | 0 | 0 | @types == 1 and $types[0] eq $self->primary_tag |
804 | 0 | 0 | 0 | $ref && $ref eq 'ARRAY' |
line | l | !l | condition |
---|---|---|---|
197 | 3 | 0 | $arg{-'strand'} ||= 0 |
207 | 0 | 3 | $arg{-'type'} || $arg{-'primary_tag'} || 'feature' |
209 | 0 | 3 | $arg{-'source'} || $arg{-'source_tag'} || '' |
220 | 0 | 3 | $arg{-'is_circular'} || 0 |
243 | 0 | 0 | $self->{'segments'} ||= [] |
249 | 0 | 0 | $self->start || 999999999999 |
250 | 0 | 0 | $self->end || -999999999999 |
331 | 0 | 0 | $rs->strand || 1 |
342 | 0 | 0 | $rs->strand || 1 |
650 | 0 | 0 | $self->{'gff3_version'} || 2 |
668 | 0 | 0 | $self->ref || '.' |
0 | 0 | $self->source || '.' | |
0 | 0 | $self->method || '.' | |
0 | 0 | $self->start || '.' | |
0 | 0 | $self->stop || '.' | |
0 | 0 | $strand || '.' | |
0 | 0 | $group || '' | |
690 | 0 | 0 | $parent_tree ||= {} |
691 | 0 | 0 | $seenit ||= {} |
720 | 0 | 0 | $self->seq_id || '.' |
0 | 0 | $self->source || '.' | |
0 | 0 | $self->method || '.' | |
0 | 0 | $self->start || '.' | |
0 | 0 | $self->stop || '.' | |
0 | 0 | $strand || '.' | |
0 | 0 | $group || '' |
line | l | !l&&r | !l&&!r | condition |
---|---|---|---|---|
206 | 0 | 0 | 3 | $arg{-'name'} || $arg{-'seqname'} || $arg{-'display_id'} || $arg{-'display_name'} || $arg{-'id'} |
213 | 0 | 0 | 3 | $arg{-'seq_id'} || $arg{-'ref'} |
214 | 0 | 0 | 3 | $arg{-'attributes'} || $arg{-'tag'} |
242 | 0 | 0 | 0 | $self->{'subtype'} || $self->{'type'} |
290 | 0 | 0 | 0 | $self->{'ref'} ||= $self->{'segments'}[0]->seq_id |
827 | 0 | 0 | 0 | $fallback_id || $self->escape($self->_real_or_dummy_id) |