| Bio/SeqFeature/Lite.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % | 
| condition | 9 | 94 | 9.5 | 
| line | !l | l&&!r | l&&r | condition | 
|---|---|---|---|---|
| 223 | 0 | 0 | 3 | defined $self->{'stop'} and defined $self->{'start'} | 
| 0 | 3 | 0 | defined $self->{'stop'} and defined $self->{'start'} and $self->{'stop'} < $self->{'start'} | |
| 257 | 0 | 0 | 0 | defined $start and defined $stop | 
| 283 | 0 | 0 | 0 | $seg->start and $seg->start < $min_start | 
| 284 | 0 | 0 | 0 | $seg->end and $seg->end > $max_stop | 
| 627 | 0 | 0 | 0 | defined $strand && $strand < 0 | 
| 707 | 0 | 0 | 0 | @types == 1 and $types[0] eq $self->primary_tag | 
| 804 | 0 | 0 | 0 | $ref && $ref eq 'ARRAY' | 
| line | l | !l | condition | 
|---|---|---|---|
| 197 | 3 | 0 | $arg{-'strand'} ||= 0 | 
| 207 | 0 | 3 | $arg{-'type'} || $arg{-'primary_tag'} || 'feature' | 
| 209 | 0 | 3 | $arg{-'source'} || $arg{-'source_tag'} || '' | 
| 220 | 0 | 3 | $arg{-'is_circular'} || 0 | 
| 243 | 0 | 0 | $self->{'segments'} ||= [] | 
| 249 | 0 | 0 | $self->start || 999999999999 | 
| 250 | 0 | 0 | $self->end || -999999999999 | 
| 331 | 0 | 0 | $rs->strand || 1 | 
| 342 | 0 | 0 | $rs->strand || 1 | 
| 650 | 0 | 0 | $self->{'gff3_version'} || 2 | 
| 668 | 0 | 0 | $self->ref || '.' | 
| 0 | 0 | $self->source || '.' | |
| 0 | 0 | $self->method || '.' | |
| 0 | 0 | $self->start || '.' | |
| 0 | 0 | $self->stop || '.' | |
| 0 | 0 | $strand || '.' | |
| 0 | 0 | $group || '' | |
| 690 | 0 | 0 | $parent_tree ||= {} | 
| 691 | 0 | 0 | $seenit ||= {} | 
| 720 | 0 | 0 | $self->seq_id || '.' | 
| 0 | 0 | $self->source || '.' | |
| 0 | 0 | $self->method || '.' | |
| 0 | 0 | $self->start || '.' | |
| 0 | 0 | $self->stop || '.' | |
| 0 | 0 | $strand || '.' | |
| 0 | 0 | $group || '' | 
| line | l | !l&&r | !l&&!r | condition | 
|---|---|---|---|---|
| 206 | 0 | 0 | 3 | $arg{-'name'} || $arg{-'seqname'} || $arg{-'display_id'} || $arg{-'display_name'} || $arg{-'id'} | 
| 213 | 0 | 0 | 3 | $arg{-'seq_id'} || $arg{-'ref'} | 
| 214 | 0 | 0 | 3 | $arg{-'attributes'} || $arg{-'tag'} | 
| 242 | 0 | 0 | 0 | $self->{'subtype'} || $self->{'type'} | 
| 290 | 0 | 0 | 0 | $self->{'ref'} ||= $self->{'segments'}[0]->seq_id | 
| 827 | 0 | 0 | 0 | $fallback_id || $self->escape($self->_real_or_dummy_id) |