| line |
!l |
l&&!r |
l&&r |
condition |
|
313
|
33 |
0 |
3 |
$buffer =~ s/^Accession:\s+// and not $accession |
|
|
31 |
0 |
2 |
$buffer =~ s/^Description:\s+// and not $description |
|
470
|
105 |
21 |
27 |
$ct % 6 == 0 and $buffer =~ /^$/ |
|
609
|
0 |
62 |
7 |
defined $type and $type eq 'result' |
|
664
|
13 |
62 |
8 |
defined $type and $type eq 'result' |
|
700
|
0 |
124 |
0 |
$data and ref $data |
|
702
|
19 |
688 |
8 |
$data->{$nm} and $data->{$nm} =~ /^\s*$/o |
|
729
|
0 |
0 |
13 |
defined $data->{'Data'} and not $data->{'Data'} =~ /^\s+$/o |
|
750
|
0 |
0 |
43 |
defined $name && defined $self->{'_elements'} |
|
1096
|
0 |
0 |
3 |
$lasteval and $lastpval |
|
1193
|
0 |
0 |
3 |
$lasteval and $lastpval |
|
1201
|
0 |
0 |
1 |
$self->within_element('result') and $seentop |
|
1275
|
0 |
0 |
15 |
$lasteval and $lastpval |
|
1361
|
0 |
0 |
15 |
$lasteval and $lastpval |
|
1369
|
0 |
0 |
1 |
$self->within_element('result') and $seentop |
|
1508
|
0 |
0 |
2 |
$self->within_element('result') and $seentop |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
229
|
2 |
5 |
0 |
$version ||= $DEFAULT_VERSION |
|
233
|
2 |
0 |
5 |
$cutoff ||= $MINSCORE |
|
235
|
0 |
7 |
0 |
$algorithm ||= $DEFAULT_ALGORITHM |
|
299
|
0 |
1 |
4 |
not defined $buffer or $buffer =~ /^\[ok/ |
|
365
|
4 |
5 |
25 |
$buffer =~ /^\s+rank\s+E-value/ or $buffer =~ /\-\-\-/ |
|
|
9 |
9 |
16 |
$buffer =~ /^\s+rank\s+E-value/ or $buffer =~ /\-\-\-/ or $buffer =~ /^$/ |
|
|
14 |
1 |
15 |
$buffer =~ /^\s+rank\s+E-value/ or $buffer =~ /\-\-\-/ or $buffer =~ /^$/ or $buffer =~ /No hits detected/ |
|
411
|
0 |
15 |
60 |
$buffer =~ /^Internal CM pipeline statistics/ or $buffer =~ /NC$/ |
|
|
15 |
0 |
60 |
$buffer =~ /^Internal CM pipeline statistics/ or $buffer =~ /NC$/ or $buffer =~ /^\>\>/ |
|
|
15 |
15 |
30 |
$buffer =~ /^\s+rank\s+E-value/ or $buffer =~ /^\s----/ |
|
|
30 |
15 |
15 |
$buffer =~ /^\s+rank\s+E-value/ or $buffer =~ /^\s----/ or $buffer =~ /^$/ |
|
|
30 |
0 |
15 |
$buffer =~ /^\s+rank\s+E-value/ or $buffer =~ /^\s----/ or $buffer =~ /^$/ or $buffer =~ /No hits detected/ |
|
470
|
12 |
3 |
153 |
$buffer =~ /^>>\s/ or $buffer =~ /^Internal CM pipeline statistics/ |
|
750
|
0 |
3 |
40 |
not defined $name && defined $self->{'_elements'} or scalar @{$self->{'_elements'};} == 0 |
|
1095
|
2 |
1 |
0 |
$maxscore ||= $lastscore |
|
1097
|
2 |
1 |
0 |
$mineval ||= $lasteval |
|
1098
|
2 |
1 |
0 |
$minpval ||= $lastpval |
|
1274
|
12 |
3 |
0 |
$maxscore ||= $lastscore |
|
1276
|
12 |
3 |
0 |
$mineval ||= $lasteval |
|
1277
|
12 |
3 |
0 |
$minpval ||= $lastpval |
|
1411
|
0 |
2 |
4 |
$line =~ /^memory/msx or $line =~ /^CYK\smemory/msx |
|
1467
|
0 |
26 |
208 |
not defined $line or $line =~ /^\S+/ |