| line |
!l |
l&&!r |
l&&r |
condition |
|
166
|
0 |
380 |
0 |
defined $self->{'_reporttype'} and $self->{'_reporttype'} eq 'HMMSEARCH' || $self->{'_reporttype'} eq 'HMMPFAM' |
|
334
|
4816 |
0 |
48 |
$seq_cov =~ /\]$/ and scalar @{$hitinfo[$hindex];} == 5 |
|
341
|
0 |
4859 |
5 |
$hmm_cov =~ /\]$/ and not exists $self->{'_values'}{'RESULT-query_length'} |
|
355
|
50 |
4 |
69 |
$hmm_cov =~ /\]$/ and scalar @{$hitinfo[$hindex];} == 5 |
|
362
|
121 |
0 |
2 |
$seq_cov =~ /\]$/ and not exists $self->{'_values'}{'RESULT-query_length'} |
|
561
|
961 |
0 |
104 |
$buffer =~ /^\s+(?:CS|RF)\s+/o and $count == 0 |
|
|
238 |
569 |
2 |
$count != 1 and $buffer =~ /^\s+$/o |
|
848
|
80976 |
9974 |
16 |
defined $type and $type eq 'result' |
|
884
|
19513 |
308 |
127 |
$data and $line eq 'Hsp_hseq' |
|
963
|
80976 |
9974 |
16 |
defined $type and $type eq 'result' |
|
999
|
20187 |
40023 |
20766 |
$self->in_element('hsp') and $data->{'Name'} =~ /Hsp\_(?:qseq|hseq|csline|midline)/o |
|
|
60210 |
19513 |
1253 |
$self->in_element('hsp') and $data->{'Name'} =~ /Hsp\_(?:qseq|hseq|csline|midline)/o and defined $data->{'Data'} |
|
1005
|
19514 |
2 |
61460 |
defined $data->{'Data'} and not $data->{'Data'} =~ /^\s+$/o |
|
1028
|
0 |
0 |
254 |
defined $name && defined $self->{'_elements'} |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
166
|
262 |
103 |
15 |
$self->{'_reporttype'} eq 'HMMSEARCH' || $self->{'_reporttype'} eq 'HMMPFAM' |
|
261
|
5 |
11 |
305 |
$buffer =~ /^Histogram/o or $buffer =~ m[^//]o |
|
264
|
11 |
5 |
3141 |
$buffer =~ /^Model\s+Description/o or $buffer =~ /^Sequence\s+Description/o |
|
|
16 |
16 |
3125 |
$buffer =~ /^Model\s+Description/o or $buffer =~ /^Sequence\s+Description/o or $buffer =~ /^\-\-\-/o |
|
286
|
16 |
16 |
4987 |
$buffer =~ /^(?:Model|Sequence)\s+Domain/ or $buffer =~ /^\-\-\-/ |
|
390
|
1 |
11 |
1192 |
$buffer =~ /^Histogram/o or $buffer =~ m[^//]o |
|
|
12 |
0 |
1192 |
$buffer =~ /^Histogram/o or $buffer =~ m[^//]o or $buffer =~ /^Query(?:\s+(?:sequence|HMM))?(?:\s+\d+)?:/o |
|
423
|
0 |
0 |
127 |
not defined $info or $info->[0] ne $name |
|
561
|
2 |
241 |
566 |
$count != 1 and $buffer =~ /^\s+$/o or length $buffer == 0 |
|
|
243 |
2 |
564 |
$count != 1 and $buffer =~ /^\s+$/o or length $buffer == 0 or $buffer =~ /^\s+\-?\*\s*$/ |
|
|
243 |
2 |
562 |
$count != 1 and $buffer =~ /^\s+$/o or length $buffer == 0 or $buffer =~ /^\s+\-?\*\s*$/ or $buffer =~ /^\s+\S+\s+\-\s+\-\s*$/ |
|
1028
|
0 |
0 |
254 |
not defined $name && defined $self->{'_elements'} or scalar @{$self->{'_elements'};} == 0 |