| line |
true |
false |
branch |
|
178
|
1 |
765 |
if (/^#\s((?:\S+?)?BLAST[NPX])\s(\d+\.\d+.+\d{4}\])/) { } |
|
|
1 |
764 |
elsif (/^#\s+((?:\S+?)?BLAST[NPX])\s+(.+)/) { } |
|
183
|
1 |
0 |
if $alg |
|
184
|
1 |
0 |
if $ver |
|
193
|
78 |
686 |
if /^#/ or /^\s*$/ |
|
196
|
0 |
686 |
if @fields == 1 |
|
204
|
8 |
678 |
if (@fields == 12) { } |
|
|
675 |
3 |
elsif (@fields == 13) { } |
|
|
3 |
0 |
elsif (@fields == 22 or @fields == 24) { } |
|
222
|
683 |
3 |
if (@fields == 12 or @fields == 13) |
|
233
|
4 |
682 |
if (defined $lastquery and $lastquery ne $qname) { } |
|
|
11 |
671 |
elsif (not defined $lastquery) { } |
|
|
640 |
31 |
elsif ($lasthit ne $hname) { } |
|
244
|
2 |
9 |
if $ver |
|
259
|
640 |
0 |
if ($self->in_element('hit')) |
|
275
|
671 |
11 |
if (not defined $positives and defined $percent_pos) |
|
305
|
7 |
1 |
if (defined $lasthit and defined $lastquery) |
|
306
|
7 |
0 |
if ($self->in_element('hit')) |
|
329
|
1344 |
8798 |
if (my $type = $Bio::SearchIO::blasttable::MODEMAP{$nm}) |
|
331
|
1344 |
0 |
if ($self->_will_handle($type)) |
|
337
|
11 |
10131 |
if ($nm eq 'Result') |
|
363
|
1344 |
8798 |
if (my $type = $Bio::SearchIO::blasttable::MODEMAP{$nm}) { } |
|
|
8798 |
0 |
elsif ($Bio::SearchIO::blasttable::MAPPING{$nm}) { } |
|
364
|
1344 |
0 |
if ($self->_will_handle($type)) |
|
372
|
0 |
8798 |
if (ref($Bio::SearchIO::blasttable::MAPPING{$nm}) =~ /hash/i) { } |
|
383
|
11 |
10131 |
if $nm eq 'Result' |
|
429
|
0 |
8798 |
unless grep /Data/, keys %$data |
|
430
|
8 |
8790 |
unless (defined $data->{'Data'}) |
|
434
|
0 |
8790 |
if ($data->{'Data'} =~ /^\s+$/) |
|
435
|
0 |
0 |
unless $data->{'Name'} =~ /Hsp\_(midline|qseq|hseq)/ |
|
438
|
0 |
8790 |
if ($self->in_element('hsp') and $data->{'Name'} =~ /Hsp\_(qseq|hseq|midline)/) |
|
461
|
1344 |
0 |
if (defined $value) |
|
484
|
0 |
0 |
if not defined $name || defined $self->{'_elements'} or scalar @{$self->{'_elements'};} == 0 |
|
486
|
0 |
0 |
if ($_ eq $name) |
|
508
|
1 |
9436 |
unless defined $self->{'_elements'}[0] |
|
583
|
12 |
9 |
if @_ |
|
631
|
2655 |
33 |
defined $self->{'_will_handle_cache'}{$type} ? : |
|
634
|
2688 |
0 |
$will_handle ? : |