| line |
true |
false |
branch |
|
111
|
0 |
1 |
if $self->{'_evalue'} |
|
164
|
0 |
1 |
if $reference |
|
169
|
0 |
1 |
unless $reference |
|
179
|
0 |
1 |
unless defined $gffio |
|
187
|
1 |
0 |
if $result->can('rewind') |
|
188
|
0 |
1 |
if defined $resultfilter and not &{$resultfilter;}($result) |
|
192
|
0 |
2 |
if (defined $self->{'_evalue'}) |
|
193
|
0 |
0 |
unless $hit->significance < $self->{'_evalue'} |
|
195
|
0 |
2 |
if defined $hitfilter and not &{$hitfilter;}($hit) |
|
197
|
2 |
0 |
$reference eq 'hit' ? : |
|
198
|
2 |
0 |
$reference eq 'hit' ? : |
|
199
|
2 |
0 |
if ($self->{'_signif'}) { } |
|
204
|
0 |
2 |
unless $refseq |
|
206
|
0 |
2 |
unless $refseq |
|
207
|
0 |
2 |
unless $source eq 'BLASTN' |
|
217
|
0 |
5 |
if (defined $self->{'_evalue'}) |
|
219
|
0 |
0 |
unless $hsp->significance < $self->{'_evalue'} |
|
221
|
0 |
5 |
if defined $hspfilter and not &{$hspfilter;}($hsp) |
|
222
|
5 |
0 |
if ($hsp->hit->strand >= 0) |
|
224
|
3 |
2 |
if (defined $qpmin) { } |
|
225
|
0 |
3 |
if $hsp->query->start < $qpmin |
|
226
|
2 |
1 |
if $hsp->query->end > $qpmax |
|
227
|
0 |
3 |
if $hsp->hit->start < $spmin |
|
228
|
2 |
1 |
if $hsp->hit->end > $spmax |
|
236
|
0 |
5 |
if ($hsp->hit->strand < 0) |
|
238
|
0 |
0 |
if (defined $qmmin) { } |
|
239
|
0 |
0 |
if $hsp->query->start < $qmmin |
|
240
|
0 |
0 |
if $hsp->query->end > $qmmax |
|
241
|
0 |
0 |
if $hsp->hit->start < $smmin |
|
242
|
0 |
0 |
if $hsp->hit->end > $smmax |
|
252
|
0 |
2 |
unless scalar(@plus_hsps) + scalar(@minus_hsps) |
|
261
|
2 |
0 |
if (scalar @plus_hsps) |
|
264
|
0 |
2 |
if ($format == 2.5) { } |
|
271
|
2 |
0 |
if ($self->{'_cigar'}) |
|
290
|
0 |
2 |
if (scalar @minus_hsps) |
|
293
|
0 |
0 |
if ($format == 2.5) { } |
|
329
|
0 |
5 |
if ($format == 2.5) { } |
|
337
|
5 |
0 |
if ($self->{'_cigar'}) |
|
368
|
0 |
0 |
if ($format == 2.5) { } |
|
376
|
0 |
0 |
if ($self->{'_cigar'}) |
|
401
|
0 |
0 |
unless $method |
|
403
|
0 |
0 |
if ($method ne 'HSP' and $method ne 'HIT' and $method ne 'RESULT') |
|
409
|
0 |
0 |
if ($code) |
|
410
|
0 |
0 |
unless ref($code) =~ /CODE/ |