| line |
true |
false |
branch |
|
177
|
0 |
179 |
unless defined $parent or $chunk |
|
179
|
179 |
0 |
if $parent |
|
181
|
145 |
34 |
if ($chunk) |
|
183
|
145 |
0 |
if (ref $chunk eq 'ARRAY') { } |
|
192
|
34 |
145 |
if $hsp_data |
|
199
|
34 |
34 |
if (@_) |
|
271
|
18 |
0 |
if defined $type |
|
272
|
0 |
18 |
if defined $type and $type =~ /subject|sbjct/ |
|
273
|
4 |
14 |
if not defined $type or $type eq 'hsp' or not $type =~ /query|hit|subject|sbjct|total/ |
|
297
|
0 |
0 |
if defined $type |
|
298
|
0 |
0 |
if defined $type and $type =~ /subject|sbjct/ |
|
299
|
0 |
0 |
if not defined $type or $type eq 'hsp' or not $type =~ /query|hit|subject|sbjct|total/ |
|
347
|
0 |
0 |
if defined $type |
|
348
|
0 |
0 |
if not defined $type or $type eq 'hsp' or not $type =~ /query|hit|subject|sbjct|total/ |
|
349
|
0 |
0 |
if $type =~ /sbjct|subject/ |
|
351
|
0 |
0 |
if ($type eq 'total') |
|
420
|
0 |
36 |
unless defined $type |
|
423
|
10 |
26 |
if ($type =~ /^q/i) { } |
|
|
10 |
16 |
elsif ($type =~ /^(hit|subject|sbjct)/) { } |
|
481
|
4 |
0 |
if ($hs and $qs) |
|
526
|
0 |
164 |
if $seqType eq 'sbjct' |
|
529
|
102 |
62 |
if ($t eq 'q') { } |
|
|
62 |
0 |
elsif ($t eq 's' or $t eq 'h') { } |
|
541
|
71 |
93 |
if ($t eq 'c') { } |
|
|
54 |
39 |
elsif ($t eq 'i') { } |
|
|
35 |
4 |
elsif ($t eq 'n') { } |
|
|
4 |
0 |
elsif ($t eq 'g') { } |
|
542
|
36 |
35 |
if ($class eq 'conserved-not-identical') { } |
|
567
|
35 |
129 |
if ($class eq 'conservedall_inds') { } |
|
576
|
0 |
164 |
$collapse ? : |
|
661
|
0 |
14 |
unless defined $val |
|
664
|
6 |
8 |
if ($val =~ /^q/i) { } |
|
|
8 |
0 |
elsif ($val =~ /^hi|^s/i) { } |
|
|
0 |
0 |
elsif ($val =~ /^list|array/i) { } |
|
694
|
0 |
0 |
wantarray ? : |
|
|
0 |
14 |
unless defined $val |
|
697
|
6 |
8 |
if ($val =~ /^q/i) { } |
|
|
8 |
0 |
elsif ($val =~ /^(hi|s)/i) { } |
|
|
0 |
0 |
elsif ($val =~ /^list|array/i) { } |
|
727
|
0 |
0 |
wantarray ? : |
|
|
0 |
14 |
unless defined $val |
|
730
|
6 |
8 |
if ($val =~ /^q/i) { } |
|
|
8 |
0 |
elsif ($val =~ /^(hi|s)/i) { } |
|
|
0 |
0 |
elsif ($val =~ /^list|array/i) { } |
|
760
|
0 |
12 |
if $seqType eq 'sbjct' |
|
761
|
0 |
12 |
if ($seqType =~ /^(m|ho)/i) |
|
767
|
4 |
6 |
$seqType =~ /^q/i ? : |
|
768
|
8 |
2 |
$id ? : |
|
800
|
7 |
12 |
if ($type =~ /^q/i) { } |
|
|
10 |
2 |
elsif ($type =~ /^(s)|(hi)/i) { } |
|
|
2 |
0 |
elsif ($type =~ /^(ho)|(ma)/i) { } |
|
853
|
0 |
0 |
if $seqType eq 'sbjct' |
|
856
|
0 |
0 |
if (not +(defined $beg || defined $end) && $self->seq_str('match')) { } |
|
864
|
0 |
0 |
if ($beg == 0) { } |
|
|
0 |
0 |
elsif ($end == 0) { } |
|
873
|
0 |
0 |
if ($end >= $stop) { } |
|
879
|
0 |
0 |
if ($beg < $start) |
|
885
|
0 |
0 |
unless (CORE::length $seq) |
|
938
|
4 |
0 |
if ($seqType eq 'query') { } |