| line |
true |
false |
branch |
|
464
|
0 |
583 |
unless defined $val |
|
467
|
279 |
304 |
if ($val =~ /^q/i) { } |
|
|
304 |
0 |
elsif ($val =~ /^hi|^s/i) { } |
|
|
0 |
0 |
elsif ($val =~ /^list|array/i) { } |
|
500
|
107 |
62 |
unless defined $val |
|
503
|
131 |
38 |
if ($val =~ /^q/i) { } |
|
|
38 |
0 |
elsif ($val =~ /^(hi|s)/i) { } |
|
|
0 |
0 |
elsif ($val =~ /^list|array/i) { } |
|
533
|
106 |
64 |
unless defined $val |
|
536
|
136 |
34 |
if ($val =~ /^q/i) { } |
|
|
34 |
0 |
elsif ($val =~ /^(hi|s)/i) { } |
|
|
0 |
0 |
elsif ($val =~ /^list|array/i) { } |
|
574
|
0 |
0 |
if $seqType eq 'hit' |
|
576
|
0 |
0 |
if ($seqType =~ /^(m|ho)/i) |
|
580
|
0 |
0 |
$seqType =~ /^q/i ? : |
|
581
|
0 |
0 |
$id ? : |
|
612
|
388 |
7129 |
if ($type =~ /^q/i) { } |
|
|
405 |
6724 |
elsif ($type =~ /^(s)|(hi)/i) { } |
|
|
6724 |
0 |
elsif ($type =~ /^(ho)|(ma)/i) { } |
|
671
|
0 |
137 |
if $seqType eq 'hit' |
|
673
|
111 |
26 |
if (not +(defined $beg || defined $end) && $self->seq_str('match')) { } |
|
682
|
0 |
26 |
if ($beg == 0) { } |
|
|
0 |
26 |
elsif ($end == 0) { } |
|
685
|
0 |
26 |
if ($end > $stop) |
|
686
|
0 |
26 |
if ($beg < $start) |
|
690
|
4 |
22 |
if ($self->gaps) |
|
704
|
0 |
26 |
if ($self->algorithm =~ /TBLAST[NX]/ and $seqType eq 'sbjct') { } |
|
|
0 |
26 |
elsif ($self->algorithm =~ /T?BLASTX/ and $seqType eq 'query') { } |
|
719
|
0 |
26 |
unless (CORE::length $seq) |